Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K20
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 31 0.52
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 29 1.2
03_02_1034 + 13555569-13556084,13556096-13556527 27 4.9
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630... 27 4.9
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 27 4.9
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 27 6.4
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 27 6.4
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 27 6.4
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 27 8.5
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 27 8.5
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 27 8.5
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 30.7 bits (66), Expect = 0.52
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -2
Query: 359 EHCHHMEHFGIVIGH-IHATEDKSGKHFHVFGFLQIDHGSI-TTFDFAC*DSFADHLLNI 186
E CH M GIV+GH + EDK + F ++ F +D I T F+ A F++ L+I
Sbjct: 468 EKCHFMVREGIVLGHRVFEREDKIMEKFIIY-FFCLDLLKIQTKFNRAYLLQFSESKLHI 526
Query: 185 I 183
I
Sbjct: 527 I 527
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 165 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 341
KL +LL + +QM++EG LT D + + KK D M + IL MN + +M
Sbjct: 515 KLLVLLQNGKQMVQEGALTALASVADSSQEHFKKYYDAVMPYLKAIL--MNATDKSNRML 572
Query: 342 HMMTM 356
+M
Sbjct: 573 RAKSM 577
>03_02_1034 + 13555569-13556084,13556096-13556527
Length = 315
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 213 ILTGKIERRDGTMINLK---KPEDVEMLARLILGGMNVANDDA 332
+L+G R DG ++ + P D+ L R+ L G NV D+A
Sbjct: 218 LLSGFATRSDGPELDDQLELTPRDIRRLVRMALKGKNVERDEA 260
>01_07_0310 +
42660671-42660795,42660996-42661026,42662958-42663079,
42663428-42663544,42663881-42663950
Length = 154
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 72 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 209
K +W ++ D P N +PV + N K K QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 39 DIKMFM--WNEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKM 176
D K F+ W E N WP + +P G ++Q F +K++M
Sbjct: 109 DTKAFLAAWEETCNNEGWPILIIPGGRTFLLKQIKFNGSCKSPIKIQM 156
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 177 LLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLARL 296
+LDD+E+ + +G+ T K RD +I ++E+ RL
Sbjct: 382 ILDDLERAVDDGVNTYKSMCRDSRIIPGAAATEIELARRL 421
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 87 PKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGILTGKIER-RDGT 248
PK R+P V ++N VP+T + L + +D+E MI G++++ DGT
Sbjct: 18 PKSRIPKLGGSEVHESNIVPITVDKLTPEQ-KNDLEAMISS--KDGEVQQVSDGT 69
>01_06_0192 +
27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 105 NGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGIL 218
NGDE+P +NN T + + + LL EQ + E L
Sbjct: 306 NGDELPCNENNAEDGTGSSHEHEHLLVQNEQTVEESNL 343
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 150 TSENLKLKMLLDDVEQMIREGILTGKIERRDGTMINL 260
TS + LK+L D+++ + + GIL + G ++NL
Sbjct: 272 TSTLITLKLLFDELDFLFKFGILKDEKGNSGGPLVNL 308
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 316 TFMPPRISLASISTSSGFFRLIMVPSRRSI 227
T MPP++ LA +STSS + V S+ I
Sbjct: 496 TPMPPQVDLAEVSTSSTSHEIDKVSSKDGI 525
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 43 LKCSCGMNPSRTVIGLRSACPMEMR 117
L C G NPSR +GL +A P R
Sbjct: 20 LPCLQGSNPSRPSLGLTNALPWRRR 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,606
Number of Sequences: 37544
Number of extensions: 237891
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -