Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K20
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             32   0.18 
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)                       28   3.8  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)                   27   8.7  
SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)            27   8.7  

>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 24  SHKMCDIKMFMWNEPVKNGYWPKI-RLPNGDEMPVRQNNFVP 146
           +HK   IK+    E V+N ++ K  R PNG+++     NFVP
Sbjct: 91  THKKVHIKLVTEMESVRNRWFDKFGRYPNGEDIDRMYKNFVP 132


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 175 CF*MMLSR*SAKES*QAKSNVVMEP*SI*RNPKTWKCL 288
           C  ++L + +AKES +  +N   EP     N K W CL
Sbjct: 139 CKRVLLKKDNAKESMEGLTNACKEPLQEKANQKMWNCL 176


>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 590

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 401 VLVHIILIVTQHFSEHCHHMEH 336
           ++ HII+I+T   + H HH  H
Sbjct: 406 IITHIIIIITPLANHHSHHHHH 427


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 251  DQSEETRRRGNACQTYPRWHECGQ*RCQNVPYDDNVQKNAELQSV 385
            DQ+ E +R   A Q+ PR  E      QN  Y+DNV ++ E+Q+V
Sbjct: 2317 DQAREMQR---AAQSQPRVSEISA-AVQNT-YEDNVNQDQEMQAV 2356


>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 410 PYGVLVHIILIVTQHFSEHCHHMEHFGIVIGHIHATEDKSGK 285
           P   LVHI +         CH ++H G ++ +  A E KSGK
Sbjct: 119 PTDNLVHIGVFDCSKNERICHDLDHVGEIV-YFKAGEIKSGK 159


>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
          Length = 304

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 401 VLVHIILIVTQHFSEHCHHMEHFGIVIGHIHATEDKSGKHFH 276
           +++ II+I+T   + H HH  H  ++  H H        H H
Sbjct: 139 IIIIIIIIITIVIAIHHHHYYHHHLLHHHHHHWHHHHHHHRH 180


>SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)
          Length = 152

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 401 VLVHIILIVTQHFSEHCHHMEH-FGIVIGHIHATEDKSGKH 282
           + +  + IVT H  +H HH  H  G  +G  +    KS +H
Sbjct: 14  IAISTVAIVTGHLQQHHHHHFHQCGHYLGLNYPFVPKSSRH 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,332
Number of Sequences: 59808
Number of extensions: 279727
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)