Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K20
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 25 0.47
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 25 0.47
U28928-7|AAA68339.1| 665|Caenorhabditis elegans Peroxisomal mem... 28 2.5
Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical p... 28 3.3
Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical pr... 28 3.3
AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribo... 28 3.3
Z69716-4|CAA93528.1| 480|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81496-13|CAB04075.1| 365|Caenorhabditis elegans Hypothetical p... 26 10.0
Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical p... 26 10.0
Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical pr... 26 10.0
U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical pr... 26 10.0
AL031627-26|CAA20972.1| 365|Caenorhabditis elegans Hypothetical... 26 10.0
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 25.0 bits (52), Expect(2) = 0.47
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 34 CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 120
CAT++CS G ++ A CP C
Sbjct: 381 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 410
Score = 24.2 bits (50), Expect(2) = 0.47
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 16 NVYHTKCATLKCSCG 60
N+ T C+T+KCS G
Sbjct: 335 NIQITPCSTMKCSAG 349
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 25.0 bits (52), Expect(2) = 0.47
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 34 CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 120
CAT++CS G ++ A CP C
Sbjct: 316 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 345
Score = 24.2 bits (50), Expect(2) = 0.47
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 16 NVYHTKCATLKCSCG 60
N+ T C+T+KCS G
Sbjct: 270 NIQITPCSTMKCSAG 284
>U28928-7|AAA68339.1| 665|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 1 protein.
Length = 665
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 123 VRQNNFVPVTSENLKLKMLLD-DVEQMIREGILTGKIERRDG 245
+R P TS ++K+K + D D+EQM+ LT +ER G
Sbjct: 525 LRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILEREGG 566
>Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical
protein F20C5.1d protein.
Length = 705
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +3
Query: 111 DEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLA 290
DE+ + +NN E ++ + DD E + GI+ + D T ++ + +EM+
Sbjct: 143 DELVLEENNKEMRDGEQVQQDLFADDQELIEYPGIMKDTTTQLDITDSEVETAQKMEMIE 202
Query: 291 RLILGGMNVANDDAKMFHMMTMFRKMLSYNQYNMDKYTVR 410
V D T ++ + +Q N+ TVR
Sbjct: 203 ETEADSTFVGEDSKNQRQSGTTSDEVDADSQINLATKTVR 242
>Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical
protein F20C5.1a protein.
Length = 781
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +3
Query: 111 DEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLA 290
DE+ + +NN E ++ + DD E + GI+ + D T ++ + +EM+
Sbjct: 143 DELVLEENNKEMRDGEQVQQDLFADDQELIEYPGIMKDTTTQLDITDSEVETAQKMEMIE 202
Query: 291 RLILGGMNVANDDAKMFHMMTMFRKMLSYNQYNMDKYTVR 410
V D T ++ + +Q N+ TVR
Sbjct: 203 ETEADSTFVGEDSKNQRQSGTTSDEVDADSQINLATKTVR 242
>AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 long form protein.
Length = 781
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +3
Query: 111 DEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLA 290
DE+ + +NN E ++ + DD E + GI+ + D T ++ + +EM+
Sbjct: 143 DELVLEENNKEMRDGEQVQQDLFADDQELIEYPGIMKDTTTQLDITDSEVETAQKMEMIE 202
Query: 291 RLILGGMNVANDDAKMFHMMTMFRKMLSYNQYNMDKYTVR 410
V D T ++ + +Q N+ TVR
Sbjct: 203 ETEADSTFVGEDSKNQRQSGTTSDEVDADSQINLATKTVR 242
>Z69716-4|CAA93528.1| 480|Caenorhabditis elegans Hypothetical
protein C04B4.4 protein.
Length = 480
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 12 MERLSHKMCDIKMFMWNEPVKNGYWPKIRLPNGDEMPVRQNNFVP 146
++ S+KM D+K F N+P K+ + + G PV+ N P
Sbjct: 392 LKMTSNKMLDLKGFSMNDPPKSRFAIANQNSEGRASPVQPKNTNP 436
>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical
protein C25F9.2 protein.
Length = 1469
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 60 NEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLK 173
N +N Y P + PN ++M ++N V ++SE+ KLK
Sbjct: 138 NSDSENNYKPIMEFPNDEDMKFFKDN-VLLSSEDPKLK 174
>Z81496-13|CAB04075.1| 365|Caenorhabditis elegans Hypothetical
protein Y102A5C.1 protein.
Length = 365
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 108 GDEMPVRQNNFVPVTSENLKLKMLLDDV 191
GD+ +RQ F +++ +L++ M LD V
Sbjct: 332 GDDEGIRQTTFYEISTNSLEMTMFLDFV 359
>Z81068-12|CAJ30227.1| 558|Caenorhabditis elegans Hypothetical
protein F25H5.3d protein.
Length = 558
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 276 VEMLARLILGGMNVA 320
VEML +LIL GMN+A
Sbjct: 89 VEMLQKLILNGMNIA 103
>Z81068-4|CAE54896.1| 531|Caenorhabditis elegans Hypothetical
protein F25H5.3c protein.
Length = 531
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 276 VEMLARLILGGMNVA 320
VEML +LIL GMN+A
Sbjct: 62 VEMLQKLILNGMNIA 76
>Z81068-3|CAB02983.1| 600|Caenorhabditis elegans Hypothetical
protein F25H5.3b protein.
Length = 600
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 276 VEMLARLILGGMNVA 320
VEML +LIL GMN+A
Sbjct: 131 VEMLQKLILNGMNIA 145
>Z81068-2|CAB02984.1| 562|Caenorhabditis elegans Hypothetical
protein F25H5.3a protein.
Length = 562
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 276 VEMLARLILGGMNVA 320
VEML +LIL GMN+A
Sbjct: 93 VEMLQKLILNGMNIA 107
>U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical
protein W09C3.4 protein.
Length = 296
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 162 LKLKMLLDDVEQMIREGILTGKIERR-DG 245
L + + L+D+E+++ +L G IERR DG
Sbjct: 219 LNVPLSLEDLERILEVAVLDGTIERRADG 247
>AL031627-26|CAA20972.1| 365|Caenorhabditis elegans Hypothetical
protein Y102A5C.1 protein.
Length = 365
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 108 GDEMPVRQNNFVPVTSENLKLKMLLDDV 191
GD+ +RQ F +++ +L++ M LD V
Sbjct: 332 GDDEGIRQTTFYEISTNSLEMTMFLDFV 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,482,186
Number of Sequences: 27780
Number of extensions: 211406
Number of successful extensions: 625
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -