Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K20
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    28   2.3  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    28   3.1  
At2g06820.1 68415.m00761 expressed protein low similarity to zin...    27   4.1  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    27   4.1  
At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    27   5.4  
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to...    27   5.4  
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral...    27   5.4  
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    27   5.4  
At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containi...    26   9.4  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 165 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 341
           KL +LL + +QM++EG LT      D +  + +K  D  M   + IL  MN  +   +M 
Sbjct: 508 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDTVMPYLKTIL--MNATDKSKRML 565

Query: 342 HMMTM 356
              +M
Sbjct: 566 RAKSM 570


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 111 DEMPVRQNNFVPVTSENLKLKMLLDDV---EQMIREGILTGKIERRDGTMINLKKPED 275
           DEM  +++  VPV   N +LKML D V   ++ + EG     +E       N ++P+D
Sbjct: 193 DEMTFKEDK-VPVLDSNKRLKMLQDPVCGEKKEVNEGTKFEWLESSRIRDANRRRPDD 249


>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 267

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +3

Query: 147 VTSENLKLKMLLDDVEQMIREGIL 218
           +TS ++K+K+LLD ++ +I+E I+
Sbjct: 151 ITSSSVKIKVLLDGLQPLIKETIV 174


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 111  DEMPV-RQNNFVPVTSENLKLKMLLDDVEQMIRE 209
            DE+PV  Q+  + + +EN KLK L+  +E+ I E
Sbjct: 1037 DEVPVIDQSAIIKLETENQKLKALVSSMEEKIDE 1070


>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  PKIRLPNGDEMPVRQNNFVPVTSENL 164
           P+ +LP G+ +P R    +P TS +L
Sbjct: 105 PQTQLPRGESVPKRHRENLPATSSSL 130


>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
          Length = 639

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 99  LPNGDEMPVRQNNFVP-VTSENLKLKMLLDDVEQMIRE 209
           +P   E+PV     V  +TSEN KLK L+  ++Q I E
Sbjct: 87  VPVLQEVPVVDTELVEKLTSENEKLKSLVSSLDQKIDE 124


>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
           root primordium (LRP) protein-related similar to lateral
           root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702)
          Length = 252

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  PKIRLPNGDEMPVRQNNFVPVTSENL 164
           P+ +LP G+ +P R    +P TS +L
Sbjct: 197 PQTQLPRGESVPKRHRENLPATSSSL 222


>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 177 LLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLARL 296
           +LDD+E+ + +G+ T K   RD  ++      ++E+  RL
Sbjct: 387 ILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELAQRL 426


>At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profiles PF01535: PPR repeat,
           PF03161 LAGLIDADG DNA endonuclease family
          Length = 547

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 279 EMLARLILGGMNVANDDAKMFHMM 350
           E+L  L+LGG+ + +D  K  HM+
Sbjct: 331 EVLVGLLLGGLQIESDKEKKSHMI 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,838
Number of Sequences: 28952
Number of extensions: 196270
Number of successful extensions: 498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)