Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K18
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 0.77
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 30 1.0
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 29 1.3
At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 29 1.3
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro... 28 3.1
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain... 28 3.1
At5g15510.1 68418.m01816 expressed protein 27 5.4
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic... 27 5.4
At5g22540.1 68418.m02630 expressed protein contains Pfam profile... 27 7.2
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi... 27 9.5
At4g10670.1 68417.m01743 transcription elongation factor-related... 27 9.5
At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai... 27 9.5
At3g01015.1 68416.m00001 expressed protein ; expression supporte... 27 9.5
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 64 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 207
AR++I T+KR + P+ + +++N L+KL A C Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 29.9 bits (64), Expect = 1.0
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Frame = +3
Query: 117 WQENADLYEEEVTKDYQ-RSYEIVARHV---LGAAPKPFD---KHTFMPSALDFYQTALR 275
W L+ EE + Y+ Y+I A + GA+ K D T+ L + +
Sbjct: 139 WIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQ 198
Query: 276 DPAFYQLYXRIVGYI---NAFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQ 434
PA QL R++G +A+ +YL Y K F + IND ++ + FF+ S+
Sbjct: 199 LPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSR 258
Query: 435 FDATNSVFLTKK 470
DA ++ + K+
Sbjct: 259 HDAVKALNIYKR 270
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 29.5 bits (63), Expect = 1.3
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Frame = +3
Query: 117 WQENADLYEEEVTKDYQ-RSYEIVARHVLGAAPKPFDKH-TFMPSALDFYQTALRDPAFY 290
W L+ EE + Y+ Y+I A + A+ H T M S D + PA
Sbjct: 139 WVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQL---PALQ 195
Query: 291 QLYXRIVGYIN---AFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQFDATN 449
QL R++G A+ +YL Y K F + IND ++ + FF+ S+ DA
Sbjct: 196 QLLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVK 255
Query: 450 SVFLTKK 470
++ + K+
Sbjct: 256 ALNIYKR 262
>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
PF05249: Uncharacterised protein family (UPF0187)
Length = 410
Score = 29.5 bits (63), Expect = 1.3
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +1
Query: 43 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 222
K++ + ++ KLIS +K S+ I +R + K+ L N + S S++HL H
Sbjct: 49 KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103
Query: 223 TSTPSCPVRLTFTKPHF 273
+S+PS V L+ P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120
>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
P450 76A2, eggplant, PIR:S38534
Length = 516
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 66 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 164
+K FH EKA G + +E ++ E +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278
>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein similar to unknown protein
GI:4262226 from [Arabidopsis thaliana] contains Pfam
profile PF00564: PB1 domain
Length = 272
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 339 LKPYPQEK-LHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEISTSY 488
+ P P EK LH++G + V+V + ++F D+ F + L+ + S Y
Sbjct: 21 IMPLPPEKSLHYIGGETRLVIVPRGISFLDF--FKLLSDKLLSGRSFSLKY 69
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 27.5 bits (58), Expect = 5.4
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 69 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 239
+ D+ + ++F+ Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450
Query: 240 PSALDFYQTALRDPAFY 290
P + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467
>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
Length = 344
Score = 27.5 bits (58), Expect = 5.4
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 243 SALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 422
SA ++ A+ +L ++ +A KH+ P P + GV +N V V F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240
Query: 423 DYSQFDATNSVFLTK 467
YS ++++ S LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255
>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 440
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 3 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 107
LD+ KTFV + + + + K F+D + + FV
Sbjct: 222 LDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256
>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 904
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 309 QSCXIADRMQGLEVRFGKSQAHW 241
Q C + D++Q L R KS HW
Sbjct: 640 QKCDLQDKLQHLYYRIRKSGIHW 662
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +1
Query: 10 FLKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL 189
+LK +S+ +S+ + +++ S ++ + +RT + ++KLQ + N+ LSL
Sbjct: 61 YLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIVRNNSKPLSL 120
Query: 190 A 192
+
Sbjct: 121 S 121
>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 239
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 37 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIIND-LMKLSL 189
++K NR ++ + + ++ T+G + IC + I ND L+KL+L
Sbjct: 155 FKKTCQNRTEDEINLRRRALIDVANTLGYHSTICKANMTKEITNDVLVKLNL 206
>At3g01015.1 68416.m00001 expressed protein ; expression supported
by MPSS
Length = 488
Score = 26.6 bits (56), Expect = 9.5
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 69 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 239
+ D+ + IN V Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 387 EFDYQVTEKINLVEQYKTERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 440
Query: 240 PSALDFYQTALRDPAF 287
P + + T RDP F
Sbjct: 441 PKRSNKHPTVPRDPKF 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,102
Number of Sequences: 28952
Number of extensions: 208047
Number of successful extensions: 571
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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