Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K17
         (179 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF9 Cluster: Putative uncharacterized protein; n=1; ...    56   1e-07
UniRef50_UPI0000F1DDC7 Cluster: PREDICTED: hypothetical protein;...    33   1.2  
UniRef50_Q9KQW8 Cluster: Rec2-related protein; n=18; Vibrio chol...    33   1.6  
UniRef50_UPI000023ED9B Cluster: hypothetical protein FG07934.1; ...    31   6.6  
UniRef50_Q25467 Cluster: Cuticule collagen; n=3; Tylenchoidea|Re...    31   6.6  
UniRef50_UPI00004995CF Cluster: hypothetical protein 78.t00032; ...    30   8.8  
UniRef50_Q09868 Cluster: RNA-binding post-transcriptional regula...    30   8.8  

>UniRef50_Q5MGF9 Cluster: Putative uncharacterized protein; n=1;
           Lonomia obliqua|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 88

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +3

Query: 51  VHVVDNSG-VPSDGNSDHVVIANPDPFFSQPSNGPSGNYE 167
           V VVDNS  VPSDG     VI+NPDPFFSQPSNGP+G Y+
Sbjct: 22  VQVVDNSNQVPSDGQ---FVISNPDPFFSQPSNGPNGGYQ 58


>UniRef50_UPI0000F1DDC7 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 735

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 96  HYCRPMEHHYCPPRELCLRQP 34
           H CR + HHY  PR  CLR P
Sbjct: 324 HNCRSVGHHYATPRRSCLRCP 344


>UniRef50_Q9KQW8 Cluster: Rec2-related protein; n=18; Vibrio
          cholerae|Rep: Rec2-related protein - Vibrio cholerae
          Length = 752

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 16 SSPYWPWLPQTEFTWWTIVV 75
          S+PYWPW+P   + W  ++V
Sbjct: 24 SAPYWPWMPSWGWAWLCLIV 43


>UniRef50_UPI000023ED9B Cluster: hypothetical protein FG07934.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG07934.1 - Gibberella zeae PH-1
          Length = 1389

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 66  NSGVPSDGNSDHVVIANPDPFFSQPSNGPSG 158
           NSG  SD N +    +NPD  F  P++GP+G
Sbjct: 343 NSGNGSDSNGEGDSHSNPDSPFFPPTSGPTG 373


>UniRef50_Q25467 Cluster: Cuticule collagen; n=3; Tylenchoidea|Rep:
           Cuticule collagen - Meloidogyne incognita (Southern
           root-knot nematode)
          Length = 305

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 120 PGSQ*QRGHYCRPMEHHYCPPRELCLRQPWPIRRRRKTRK 1
           PG   Q   YC       CPPR LC RQ   +R++ K +K
Sbjct: 269 PGQPGQDAQYCP------CPPRSLCSRQRNALRKQMKRKK 302


>UniRef50_UPI00004995CF Cluster: hypothetical protein 78.t00032;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 78.t00032 - Entamoeba histolytica HM-1:IMSS
          Length = 675

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPS 155
           N  H V  S  P+  NS H+ +A PD   S P N P+
Sbjct: 49  NYNHCVGYSNSPTRLNSPHITLALPDSVPSSPHNTPA 85


>UniRef50_Q09868 Cluster: RNA-binding post-transcriptional regulator
           cip2; n=2; Schizosaccharomyces pombe|Rep: RNA-binding
           post-transcriptional regulator cip2 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 576

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 66  NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 173
           N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,237,536
Number of Sequences: 1657284
Number of extensions: 3099352
Number of successful extensions: 9130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9126
length of database: 575,637,011
effective HSP length: 39
effective length of database: 511,002,935
effective search space used: 10220058700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)