Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K17
(179 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 27 3.2
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3) 27 3.2
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.3
SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068) 26 4.3
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014) 26 5.6
SB_54002| Best HMM Match : POP1 (HMM E-Value=0) 25 7.5
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.9
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33) 25 9.9
SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.9
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 25 9.9
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1) 25 9.9
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 60 VDNSGVPSDGNSDHVVIANPDPFFSQ 137
VD+SGV D S +V A +P FSQ
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ 186
>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 173
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 89 AVRWNTTIVHHVNSVCGSHGQY 24
A RW T H+ +CG HG+Y
Sbjct: 55 ATRWTTN--HNCYHICGHHGRY 74
>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 60 VDNSGVPSDGNSDHVVIANPDPFFSQ 137
VD+SGV D S +V A +P FSQ
Sbjct: 90 VDSSGVAGDQRSSLLVSATLNPLFSQ 115
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 99 GHYCRPMEHHYCPPRELCLR 40
GH C+P CPP C+R
Sbjct: 805 GHQCQPDTCDSCPPNSHCMR 824
>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 45 LRQPWPIRRRRKTRK 1
LR+P P+RRRRK +K
Sbjct: 513 LRKPLPLRRRRKLKK 527
>SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)
Length = 245
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 45 LRQPWPIRRRRKTRK 1
LR+P P+RRRRK +K
Sbjct: 207 LRKPLPLRRRRKLKK 221
>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
Length = 406
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 1 LSCFSSSPYWPWLPQTEFTWWTI 69
+ C + PYW W Q W T+
Sbjct: 216 IDCRVTIPYWQWTAQAGHLWRTL 238
>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
Length = 886
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 60 VDNSGVPSDGNSDHVVIANPDPFFSQPSNG 149
VDN D NSD V + + F ++PS G
Sbjct: 375 VDNKPSKKDSNSDRVKVDSDFEFVAKPSCG 404
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 75 VPSDGNSDHVVIANPDP 125
+P DGN D I N DP
Sbjct: 33 IPEDGNGDAAYIVNVDP 49
>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
Length = 184
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 75 VPSDGNSDHVVIANPDP 125
+P DGN D I N DP
Sbjct: 33 IPEDGNGDAAYIVNVDP 49
>SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 75 VPSDGNSDHVVIANPDP 125
+P DGN D I N DP
Sbjct: 33 IPEDGNGDAAYIVNVDP 49
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 75 VPSDGNSDHVVIANPDP 125
+P DGN D I N DP
Sbjct: 1217 IPEDGNGDAAYIVNVDP 1233
>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
Length = 245
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 75 VPSDGNSDHVVIANPDP 125
+P DGN D I N DP
Sbjct: 33 IPEDGNGDAAYIVNVDP 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,163,092
Number of Sequences: 59808
Number of extensions: 110692
Number of successful extensions: 330
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 16,821,457
effective HSP length: 38
effective length of database: 14,548,753
effective search space used: 305523813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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