Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K17
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   1.8  
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    27   2.3  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   2.3  
AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical ...    26   4.1  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    25   5.4  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    25   7.1  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    25   7.1  
U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AC006768-5|AAO25977.1|  634|Caenorhabditis elegans Hypothetical ...    25   9.4  
AC006768-4|AAF60575.1|  729|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 93  YCRPMEHHYCPPRELCLRQPWP 28
           +C P+++ Y  P  + L  PWP
Sbjct: 282 HCSPLQYPYSNPYSILLDAPWP 303


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 117 PDPFFSQPSNGPSGNYEPIS 176
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 117 PDPFFSQPSNGPSGNYEPIS 176
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.4a protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 87  GNSDHVVIANPDPFFSQPSNGPSG 158
           GN D  VI N DPF    S G  G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSGG 499


>AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.5a protein.
          Length = 527

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 87  GNSDHVVIANPDPFFSQPSNGPSG 158
           GN D  VI N DPF    S G  G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSRG 499


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 63  DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEP 170
           D SG P  G          DP  +QPS GP G + P
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNP 322


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 93  SDHVVIANPDP 125
           SDH++IA PDP
Sbjct: 519 SDHIIIATPDP 529


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 93  SDHVVIANPDP 125
           SDH++IA PDP
Sbjct: 519 SDHIIIATPDP 529


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 105 QRGHYCRPMEHHYCPPRELCLRQPWP 28
           +R   C  +E+  CP RE     PWP
Sbjct: 151 EREFKCPTIENLECPNREAIPTTPWP 176


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 105 QRGHYCRPMEHHYCPPRELCLRQPWP 28
           +R   C  +E+  CP RE     PWP
Sbjct: 151 EREFKCPTIENLECPNREAIPTTPWP 176


>U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical
           protein F18A1.7 protein.
          Length = 266

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -1

Query: 80  WNT-TIVHHVNSVCGSHGQ 27
           WN   +VH    VCG H Q
Sbjct: 71  WNMKNVVHQARKVCGHHAQ 89


>AC006768-5|AAO25977.1|  634|Caenorhabditis elegans Hypothetical
           protein Y45G12B.1c protein.
          Length = 634

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 48  RVHVVDNSGVPSDGNSDHVVIANPDPFFSQPS 143
           R + V N G+ S  N+D +++   +P F  P+
Sbjct: 386 RSNYVFNDGIASVENADAILLVGTNPRFEAPT 417


>AC006768-4|AAF60575.1|  729|Caenorhabditis elegans Hypothetical
           protein Y45G12B.1a protein.
          Length = 729

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 48  RVHVVDNSGVPSDGNSDHVVIANPDPFFSQPS 143
           R + V N G+ S  N+D +++   +P F  P+
Sbjct: 386 RSNYVFNDGIASVENADAILLVGTNPRFEAPT 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,469,830
Number of Sequences: 27780
Number of extensions: 75692
Number of successful extensions: 265
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)