Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K16
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical pr... 34 0.078
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 31 0.42
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 31 0.42
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 30 0.96
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical p... 27 9.0
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 27 9.0
>U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical
protein K02G10.5 protein.
Length = 655
Score = 33.9 bits (74), Expect = 0.078
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 395 IEKCAENCISTPEYNPVCGSDYK-TYKNQGRLFCAQNCGVQVTLARQAPCPSS 550
+E C+ENC +NPVC D K T+ + CA G++ + C S
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGIKFGASNWTNCGCS 494
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 425 TPEYNPVCGSDYKTYKNQGRL 487
T E+ VCGSD KTY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 401 KCAENCISTPEYNPVCGSDYKTYKNQ 478
KC+E C + VCG+D KTY N+
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNE 341
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 425 TPEYNPVCGSDYKTYKNQGRL 487
T E+ VCGSD KTY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 401 KCAENCISTPEYNPVCGSDYKTYKNQ 478
KC+E C + VCG+D KTY N+
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNE 349
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 330 KHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTKTREDYF 491
+ R++ + +H AL +H ++L +R A + CV+++IK + E F
Sbjct: 81 EQRHRRRRRHNETALEDHLSEKLSREKRAAAHIMRSRKCVISVIKKMSSMECSF 134
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 386 RQTIEKCAENCISTPEYNPVCGSDYKTYKNQGRLFCAQNCGVQVTLAR 529
R + + C NC +T E++PVC ++ Y+N +F + C +Q+ R
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRNL-CVFQMRRCELQLESQR 154
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 398 EKCAENCISTPEYNPVCGSDYKTYKNQGRLFCAQNC 505
E C C T + +P+C SD+ TY+N + F Q C
Sbjct: 584 EACQMPC--TDDKHPICASDFSTYENLCQ-FRKQKC 616
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 389 QTIEKCAENCISTPEYNPVCGSDYKTYKNQGRLFCAQN 502
Q ++ C + T E NP S+ YKN R+ C N
Sbjct: 284 QCVDACETETV-TDEANPCKFSNAAKYKNGSRIICGPN 320
>Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 410 ENCISTPEYNPVCGSD-YKTYKN 475
+ + T EY P C SD KTYKN
Sbjct: 73 DGILETKEYKPACMSDAKKTYKN 95
>Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 410 ENCISTPEYNPVCGSD-YKTYKN 475
+ + T EY P C SD KTYKN
Sbjct: 73 DGILETKEYKPACMSDAKKTYKN 95
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 548 KTGTGLAWPKSLGLHNFGHKIVFPGFCKFYNRYHTRGCILVLKCNS 411
KTG L K + ++NF K + G C RY + KCN+
Sbjct: 952 KTGVKLQTIKDIEMYNFIEKGIRGGICNAMLRYSRANNRHLKKCNT 997
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,328
Number of Sequences: 27780
Number of extensions: 315072
Number of successful extensions: 874
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -