Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K16
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.8  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   8.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 404 CAENCISTPEYNPVCGSDYKTYKNQGRLF-CAQNCGVQVTLARQAPC 541
           C   C     + PVC S+ K Y N   L   A + G  +T +R   C
Sbjct: 106 CMRKC--PRRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRC 150


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 173 NLFIDKNGWNKSQDGNRPEW 232
           N+F+DK G++     N  +W
Sbjct: 198 NIFLDKKGFHMDGYTNNSKW 217


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/26 (30%), Positives = 9/26 (34%)
 Frame = -1

Query: 552 DEDGHGACLAKVTWTPQFWAQNSLPW 475
           D D     L    W  Q W  + L W
Sbjct: 44  DVDEKNQILTTNCWVTQIWTDHHLKW 69



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 202 VPSVLVNK*IRVVFYLP 152
           +P +L+N    +VFY+P
Sbjct: 222 LPCILINSVALLVFYVP 238


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 158 IENNANLFIDKNGWNK 205
           I   A +F+D+NG NK
Sbjct: 84  IREIAEIFLDENGVNK 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,579
Number of Sequences: 438
Number of extensions: 4287
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)