Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K16
(552 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 33 0.096
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 30 1.2
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 29 2.7
At3g10430.1 68416.m01251 F-box family protein contains F-box dom... 28 3.6
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport... 28 3.6
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 28 3.6
At5g23910.1 68418.m02808 kinesin motor protein-related 27 6.3
At2g27570.1 68415.m03340 sulfotransferase family protein similar... 27 6.3
At5g60970.1 68418.m07648 TCP family transcription factor, putati... 27 8.3
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 27 8.3
At5g02760.1 68418.m00218 protein phosphatase 2C family protein /... 27 8.3
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con... 27 8.3
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 33.5 bits (73), Expect = 0.096
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 140 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 265
+ Y ++ NN ++I +NG N + DG +P +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +3
Query: 249 VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQH 428
V++F + +I + L CSS + + K Q L L E K+L+NA+ I +
Sbjct: 911 VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967
Query: 429 QNTTPCVVAIIKLTKT 476
Q CV +KL T
Sbjct: 968 QRDFSCVKCKLKLEVT 983
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 306 LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 431
++K S ++K R +K KH++L V EHH K+ ++A+++ +
Sbjct: 1 MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44
>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 444 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 340
T S + FS +FS+ D+P +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300
>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 583
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 333 HRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTK 473
H Y+ GKHQ+ HH R + A + + PC V +++ K
Sbjct: 277 HYYKSNGKHQV-----HHTPVFRFLDKAAIKTSSRVPCTVTKVEVAK 318
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 324 QTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 437
Q +H+ Q + +HQL L +HH +Q + ++ QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 500 FGHKIVFPGFCKFYNRYHTRGCILVL 423
FG + +F GF KFY + T IL+L
Sbjct: 398 FGRRGIFSGFFKFYGSHGTAYLILLL 423
>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420006; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 273
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 234 IHSGRFPS*DLFHPFLSINKFALFS 160
+H + PS D HP LS N LFS
Sbjct: 88 VHRSKHPSHDHHHPLLSNNPHVLFS 112
>At5g60970.1 68418.m07648 TCP family transcription factor, putative
putative basic helix-loop-helix DNA binding protein
TCP2, Arabidopsis thaliana, EMBL:AF072691
Length = 360
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 182 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 286
+DK W K+ + + + ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
to alpha-mannosidase II SP:P27046 from [Mus musculus]
Length = 1173
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 140 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 271
+RYK ++N + D NG+ S+ + IP+Q Y YP+
Sbjct: 883 VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922
>At5g02760.1 68418.m00218 protein phosphatase 2C family protein /
PP2C family protein similar to Ser/Thr protein
phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
thaliana]; similar to protein phosphatase 2C
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 370
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 536 GLAWPKSLGLHNFG 495
GL W K LGLH FG
Sbjct: 24 GLTWYKDLGLHTFG 37
>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
thaliana]
Length = 582
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 140 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 277
+ Y + NN ++I +NG N DG + + + +RI Y D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,123,892
Number of Sequences: 28952
Number of extensions: 283764
Number of successful extensions: 656
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -