Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K13
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    28   1.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   2.2  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.9  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   6.7  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.7  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   8.8  

>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 267 HKFPVYRLESYKRLKWDSTP*VYYSHNHIVSLLKVSYPQLFCFYF 133
           H FP YR   Y  + W     +Y +H++ V L+      + CF F
Sbjct: 268 HVFPRYRFCFYGYVLWLCWCTMYLTHHYFVDLVGGMCLAIICFVF 312


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 135 NKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDDKPGI 263
           ++S T+ D+  L  S   Y  ++P++C  ++  C TP D  G+
Sbjct: 162 SQSYTSIDR--LNSSSSHYSKDVPLLCGSLTIDCPTPIDLRGM 202


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 523 PPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQTD 347
           P  I   T S +P ++   +SG  +T+        +S      GGP +T + SGP+  D
Sbjct: 135 PAPINSATASMSPANN---TSGNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPVPHD 190


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 237 KTPDDKPGICVGLYNCEHITYMMLDKTRKSKMDYVRQSVCNGPE 368
           +T D KP + V  Y C+   Y +  + R+    ++  S C   E
Sbjct: 190 RTSDVKPSLTVNAYTCDRCGYEVFQEIRQK--TFLPMSECPSDE 231


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 345 VERNPFYSFWSYLASYK*YAHSCTNRHK 262
           V R  FYS +SY +S++  A+S   RH+
Sbjct: 151 VRRPRFYSSYSYPSSHQDPAYSSFKRHR 178


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 24  LLISVNLIRAQTCTTPRNESGNCVSLYDCEPL-LNLFRNKSRTAEDKKLLGDSQCGYENN 200
           ++I+ +L   Q     R+E   C +  D + + +N   + S      KLLGD        
Sbjct: 119 VVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDVNYGSHHSAIFGYTKLLGDVPGCQAEY 178

Query: 201 IPMVCCPISNACKTPDDKP 257
           I +    I N CK PDD P
Sbjct: 179 IRVPFAEI-NCCKLPDDIP 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,639
Number of Sequences: 5004
Number of extensions: 54393
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)