Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K13
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    28   6.2  
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 108 CEPLLNLFRNKSRTAEDKKLLGDSQC--GYENNIPMVCCPIS-NACKTPDDKPGICVGLY 278
           C+ L+ L   K+  +E ++   +  C  GYE N    CCP S NAC     +   C G  
Sbjct: 424 CDGLVPL---KNPNSELQRCSEEDPCPAGYECNDSSYCCPSSENACNANMSRGNGCKG-- 478

Query: 279 NCEHITYMMLDKTRKSKMDYVRQSVCNGPETFS 377
                +    DK++K    +V       P  F+
Sbjct: 479 -STQRSMWFYDKSKKKCSQFVYNGCGGTPNRFT 510


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 498 TVVNKIVGGNDTKITQYPWLVVIEYESFDHMKLLCGGSLI 617
           T+ ++++GG+++    +PW V +      H    CGGSLI
Sbjct: 53  TLDHRLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLI 89


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +3

Query: 423 LNERCSRAVTAFPLESNNECCGVEDTVVNKIVGGNDTKITQYPWLVVIEYESFDHMKLL 599
           +N+  S+   +FP   N     + DT +  + G ++ K  Q   ++ +E+ES+D +K L
Sbjct: 160 INDEFSQLCNSFP---NLHKLDISDTNIGNLSGISNLKNLQKLCMMNLEFESYDDIKEL 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,394
Number of Sequences: 27780
Number of extensions: 315835
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)