Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K13
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38320.1 68415.m04708 expressed protein                             29   2.5  
At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family prote...    29   3.3  
At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family prote...    28   4.3  

>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 303 MLDKTRKSKMDYVRQSVCNGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESN 473
           +L++ R  +M YV  S+  G     VC       NP+ M ++   S  +T   LE N
Sbjct: 120 LLERLRNKRMVYVGDSLNRGQWVSMVCMVSSVITNPKAMYMHNNGSNLITFKALEYN 176


>At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 263

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 537 ITQYPWLVVIEYESFDHMKLLCGGSLIS 620
           I  YP  +VIE E  DHM + C   L+S
Sbjct: 225 IHNYPANLVIEMEETDHMPMFCKPQLLS 252


>At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 272

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 537 ITQYPWLVVIEYESFDHMKLLCGGSLIS 620
           I  YP  +VIE E  DH+ L C   L+S
Sbjct: 234 IDNYPPNLVIEMEGTDHLPLFCKPQLLS 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,381
Number of Sequences: 28952
Number of extensions: 282599
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)