Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K12
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    31   0.69 
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      31   0.69 
Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    27   8.6  

>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +2

Query: 92  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIST 262
           V  +D+ P      VH  +     + GNS  +   +P+P    +P++ P+ +    P   
Sbjct: 452 VRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSVV 511

Query: 263 GPAFVDFNHPNYPPKRYDNPLARGGK 340
           GPAF     P  PP  +  P+    +
Sbjct: 512 GPAF-GKKVPEQPPVNFRKPIGASNR 536


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
           protein Y76A2B.1 protein.
          Length = 1057

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +2

Query: 92  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIST 262
           V  +D+ P      VH  +     + GNS  +   +P+P    +P++ P+ +    P   
Sbjct: 452 VRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSVV 511

Query: 263 GPAFVDFNHPNYPPKRYDNPLARGGK 340
           GPAF     P  PP  +  P+    +
Sbjct: 512 GPAF-GKKVPEQPPVNFRKPIGASNR 536


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = +2

Query: 92  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIST 262
           V  +D+ P      VH  +     + GNS  +   +P+P    +P++ P+ +    P   
Sbjct: 452 VRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSVV 511

Query: 263 GPAFVDFNHPNYPPKRYDNPLARGGK 340
           GPAF     P  PP  +  P+    +
Sbjct: 512 GPAF-GKKVPEQPPVNFRKPIGASNR 536


>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 188 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 304
           V A P P F+ P+  P     PI  GPAF     P   P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148


>Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical
           protein C39E9.10 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 93  CTWSIITLIIIQARFTWW-TIVVFHRTA 173
           CTW    L+ +    +WW   V+ H TA
Sbjct: 229 CTWGYTALVFVSGTLSWWEPTVIQHLTA 256


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 188 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 304
           V A P P F+ P+  P     P+  GPAF     P   P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 146 DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 271
           D SG P  G          DP  +QPS GP G + P    P+
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNPSGAPPS 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,992
Number of Sequences: 27780
Number of extensions: 250245
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)