Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K10
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.81 
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   1.1  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.9  
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    29   1.9  
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    29   1.9  
At3g62160.1 68416.m06984 transferase family protein low similari...    29   2.5  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   4.3  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   5.7  
At5g15510.1 68418.m01816 expressed protein                             27   7.6  
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    27   7.6  

>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 178 GIVTSLNRRVPREFRYGTQAVCKT 107
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 327 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 470
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 251 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 370
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +2

Query: 218 DNYNLHSVKNYEAIRFLDIFEKTFVQSLQK-GKFESYGKKIDFHDEKAINFVGNYWQENA 394
           DN  LHSV + EA     IFE   V+  +  G      +++   ++  + F+ N   EN 
Sbjct: 33  DNNRLHSVFDAEASL---IFESWMVKHGKVYGSVAEKERRLTIFEDN-LRFINNRNAENL 88

Query: 395 DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 541
             Y   +T     S         GA P+P   H FM S+ D Y+T+  D
Sbjct: 89  S-YRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSS-DRYKTSADD 135


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 306 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 485
           K++ + ++ KLIS +K     S+ I +R  +  K+ L    N +   S    S++HL H 
Sbjct: 49  KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103

Query: 486 TSTPSCPVRLTFTKPHF 536
           +S+PS  V L+   P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 175 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 86
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 329 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 427
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +2

Query: 41  KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 217
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +2

Query: 332 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 502
           + D+   + ++F+  Y  E      L EEE  +  ++  E+V +    A P P+    F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450

Query: 503 PSALDFYQTALRDPAFY 553
           P     + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467


>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 572 QSCNIADRMQGLEVRFGKSQAHW 504
           Q C++ D++Q L  R  KS  HW
Sbjct: 640 QKCDLQDKLQHLYYRIRKSGIHW 662


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,744
Number of Sequences: 28952
Number of extensions: 289546
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)