Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K08
(246 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0111 + 26552513-26553361 32 0.074
12_01_0527 - 4177928-4178235,4178849-4181438 31 0.17
02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963 27 1.6
07_01_0669 + 5027465-5027547,5027858-5027900,5028366-5028395 27 2.8
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 27 2.8
03_04_0206 - 18493178-18495310 27 2.8
01_06_0778 - 31920956-31921502,31921639-31921771,31922287-319223... 27 2.8
02_02_0640 - 12528075-12528363,12531326-12532311 26 3.7
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 26 3.7
11_06_0119 + 20321687-20323624 26 4.9
01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010 26 4.9
11_06_0306 + 22223514-22224095,22225426-22225638,22226310-222265... 25 6.4
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 25 6.4
04_01_0038 + 446314-446787,446829-447350 25 6.4
02_05_0622 + 30437533-30437577,30437694-30438177,30438301-304383... 25 6.4
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 25 8.5
04_04_1463 + 33787799-33787973,33788669-33789096 25 8.5
04_04_0604 - 26546363-26548363 25 8.5
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 25 8.5
>01_06_0111 + 26552513-26553361
Length = 282
Score = 31.9 bits (69), Expect = 0.074
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 50 GDHGLCCSASVGYHVTLFRYLLKSQLPDAIADIKGAIENFR 172
G+H C ++++G + L RYLL S LPDA I G+ ++ R
Sbjct: 217 GEHPGCRASTLGLLLLLCRYLL-SPLPDATTSINGSNDSGR 256
>12_01_0527 - 4177928-4178235,4178849-4181438
Length = 965
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 98 KLRGIRLKRNNIAHDLPISPLPTIPNLFPDLN 3
KLR + L NN+A D+P S P++ L +N
Sbjct: 189 KLRSLNLSSNNLAGDVPTSMTPSLEELVLSIN 220
>02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963
Length = 288
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 140 RLHRVIGFSTNSGTKLRGIRLKRNNIAHDLPISPLPTIPNL 18
R+ RV S ++ T L+ I LK NN +L +PNL
Sbjct: 48 RMSRVFPSSLSNFTSLKIINLKHNNFTGELSKVNFSRLPNL 88
>07_01_0669 + 5027465-5027547,5027858-5027900,5028366-5028395
Length = 51
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 7 KSGKRLGIVGSGLIGRSWAMLFRFSRIP 90
+ G R GIVG G W ++++F+ P
Sbjct: 11 RGGCRRGIVGQGATKVGWLLVYKFANNP 38
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 123 WLFNK*RNKVTWYPTEAEQHSP*SPDQSTPNNSQPFSR 10
W + R +VT+ PTE + H+ + D + Q F+R
Sbjct: 790 WYQPRTRTRVTYAPTEQQAHAASARDLYARHRDQDFAR 827
>03_04_0206 - 18493178-18495310
Length = 710
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 1 RFKSGKRLGIVGSGLIGRSW---AMLFRFSRIPRNFVPLFVEKPITRCNR 141
R G+R G+VG +G+S + +R +PR+ L VE+ I NR
Sbjct: 179 RISHGRRYGLVGPNGMGKSTLLKLLSWRQVPVPRSIDVLLVEQEIIGDNR 228
>01_06_0778 -
31920956-31921502,31921639-31921771,31922287-31922374,
31922857-31923198
Length = 369
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 125 LPDAIADIKGAIENFRERWTPK 190
+PD +ADI +E ERW P+
Sbjct: 55 VPDLLADILRCVEAGSERWPPR 76
>02_02_0640 - 12528075-12528363,12531326-12532311
Length = 424
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 12 WKKVGNCWEWTDREIMGYVVPLQSD 86
W+++G+ WE +RE +G V + ++
Sbjct: 288 WREIGDMWEEWERERLGPVAVISAE 312
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 46 IGRSWAMLFRFSRIPRNFVPLFVEKPITRCNR 141
IGR+ A L RFSR FVP VE ++ R
Sbjct: 582 IGRTDATLERFSRFKPYFVPETVEGSLSNFQR 613
>11_06_0119 + 20321687-20323624
Length = 645
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 89 HVTLFRYLLKSQLPDAIADIKGAIENFRERWTPKGESKCG*TVPNVLKGTCD 244
++ L +L Q PD++ D+K A++ F R++ G S +PN+L+ C+
Sbjct: 268 YLDLIMNILPGQFPDSLGDMK-ALQVF--RFSSNGHSI---IMPNLLQNLCN 313
>01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010
Length = 454
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 10 SGKRLGIVGSGLIGRSWAMLFRFSRIPRNF 99
SGKR+GI+G G IG + A P N+
Sbjct: 284 SGKRVGIIGLGRIGLAVAKRVEAFDCPVNY 313
>11_06_0306 +
22223514-22224095,22225426-22225638,22226310-22226576,
22227002-22227322
Length = 460
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 30 CWEWTDREIMGYVVPLQSDTT*LCSAIC*KANYPMQSLILRG 155
C +D + + P D LCS + K NYP ILRG
Sbjct: 324 CMATSDNVVRAGLTPKYRDVQTLCSMLTYKQNYPE---ILRG 362
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -1
Query: 180 HLSLKFSMAPLISAIASGNWLFNK*RNKVTWYPTEAEQHSP*SPDQSTPNNSQ 22
H+ FS SA+ GN K + + +SP P TP SQ
Sbjct: 196 HVDQDFSRRDSFSAVQPGNNALRHSTEKFNDHVSAQSPYSPPPPQSQTPPQSQ 248
>04_01_0038 + 446314-446787,446829-447350
Length = 331
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 10 SGKRLGIVGSGLIG 51
SGKR+GIVG G IG
Sbjct: 160 SGKRVGIVGLGSIG 173
>02_05_0622 +
30437533-30437577,30437694-30438177,30438301-30438354,
30438565-30438789,30438891-30438943,30439591-30439714,
30439823-30440077,30440171-30440517,30440661-30441266,
30441504-30441546,30441624-30441757
Length = 789
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 244 ITGTFQHIRNCSSAFRFP 191
ITGTF I+ CSS FP
Sbjct: 351 ITGTFSIIKQCSSLSCFP 368
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 244 ITGTFQHIRNCSSAFRFP 191
ITGTF I+ CSS FP
Sbjct: 361 ITGTFSIIKQCSSLNCFP 378
>04_04_1463 + 33787799-33787973,33788669-33789096
Length = 200
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 161 ENFRERWTPKGESKC 205
EN+R RW + E KC
Sbjct: 166 ENWRRRWISRSEGKC 180
>04_04_0604 - 26546363-26548363
Length = 666
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 125 IGFSTNSGTK-----LRGIRLKRNNIAHDLPISPLPTIPNLFP 12
+GFS+ +G + G K N A L IS LP++P FP
Sbjct: 239 VGFSSATGILFCRHYVLGWSFKMNGAAPALNISSLPSLPVTFP 281
>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 98 KLRGIRLKRNNIAHDLPISPLPTIPNLFPD 9
+L RLK + H++ S L T ++FPD
Sbjct: 1428 RLESRRLKYTSFFHNINASSLRTAKDMFPD 1457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,163,227
Number of Sequences: 37544
Number of extensions: 132183
Number of successful extensions: 404
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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