Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K08
         (246 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_2210| Best HMM Match : T_Ag_DNA_bind (HMM E-Value=5.3)              27   1.8  
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.8  
SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)              27   2.3  
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    27   3.1  
SB_16927| Best HMM Match : bZIP_1 (HMM E-Value=9.8)                    27   3.1  
SB_6421| Best HMM Match : DUF590 (HMM E-Value=2.5e-13)                 26   4.1  
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.4  
SB_36283| Best HMM Match : UCR_TM (HMM E-Value=1.6)                    25   9.4  

>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 68  NIAHDLPISPLPTIPNLFPDL 6
           N  HD P   L  IPNL P L
Sbjct: 98  NFGHDFPTDQLVPIPNLIPSL 118


>SB_2210| Best HMM Match : T_Ag_DNA_bind (HMM E-Value=5.3)
          Length = 98

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 68 NIAHDLPISPLPTIPNLFPDL 6
          N  HD P   L  IPNL P L
Sbjct: 7  NFGHDFPTDQLVPIPNLIPSL 27


>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 68  NIAHDLPISPLPTIPNLFPDL 6
           N  HD P   L  IPNL P L
Sbjct: 98  NFGHDFPTDQLVPIPNLIPSL 118


>SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)
          Length = 246

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 78  EAEQHSP*SPDQSTPNNSQPFSR 10
           EAEQH P +P QS   NS P+ +
Sbjct: 136 EAEQHKPATPPQSHYVNSNPWQQ 158


>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 104  RYLLKSQLPDAIADIKGAIENFRERW 181
            RYL+    P+++ D++ ++E+ + RW
Sbjct: 1546 RYLVIDCRPESVKDVQTSVESIKTRW 1571


>SB_16927| Best HMM Match : bZIP_1 (HMM E-Value=9.8)
          Length = 82

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 104 RYLLKSQLPDAIADIKGAIENFRERW 181
           RYL+    P+++ D++ ++E+ + RW
Sbjct: 21  RYLVIDCRPESVKDVQTSVESIKTRW 46


>SB_6421| Best HMM Match : DUF590 (HMM E-Value=2.5e-13)
          Length = 422

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 68  CSASVGYHVTLFRYLLKSQLPDAIADIK 151
           C A V + V   +YL++  +PD  AD++
Sbjct: 296 CQAQVSHIVFTIKYLIQWLIPDVPADVR 323


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 143  DIKGAIENFRERWTPKGESKCG*TVPNVLKG 235
            D   ++EN  E+WTP+ +  C   VP +L G
Sbjct: 6011 DSPDSLENIPEKWTPEVKHFCP-NVPIILVG 6040


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 107  YLLKSQLPDAIADIKGAIENFRERWTPKGESKCG*TVPNVL 229
            Y+LK    D +ADI   ++  R + +P  + K   T PN++
Sbjct: 1723 YILKMNFTDTVADIHSYLDTVRPKNSPPYKIKS--TFPNMV 1761


>SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 107 YLLKSQLPDAIADIKGAIENFRERWTPKGESKCG*TVPNVL 229
           Y+LK    D +ADI   ++  R + +P  + K   T PN++
Sbjct: 191 YILKMNFTDTVADIHSYLDTVRPKNSPPYKIKS--TFPNMV 229


>SB_36283| Best HMM Match : UCR_TM (HMM E-Value=1.6)
          Length = 106

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   RFKSGKRLGIVGSGLIGRSWAMLFR 75
           R+KS K L IV +G + +  A L+R
Sbjct: 28  RYKSKKELSIVNTGQVRKIMAALYR 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,191,898
Number of Sequences: 59808
Number of extensions: 144309
Number of successful extensions: 446
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 59
effective length of database: 13,292,785
effective search space used: 292441270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)