Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K08
         (246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   3.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   3.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   3.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   6.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   6.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   6.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   9.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    19   9.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 56  DLPISPLPTIPN 21
           DL +SPLP+I N
Sbjct: 374 DLRMSPLPSIRN 385


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 75  AEQHSP*SPDQSTPNNS 25
           A+QH+  SP  S+P +S
Sbjct: 56  AQQHNSPSPTGSSPQHS 72


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 99  KVTWYPTEAEQHSP 58
           K+   PTEA  HSP
Sbjct: 146 KIIRTPTEASWHSP 159


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 205 AFRFPLRSPSFSKVFNGP 152
           +F FPL  P +   + GP
Sbjct: 646 SFGFPLDKPLYDFNYEGP 663


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 205 AFRFPLRSPSFSKVFNGP 152
           +F FPL  P +   + GP
Sbjct: 646 SFGFPLDKPLYDFNYEGP 663


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 146 YQRLHRVIGFSTNSGTKLRGIRLKR 72
           Y RL R +G +++  T   G+RL +
Sbjct: 32  YNRLIRPVGNNSDRLTVKMGLRLSQ 56


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 216 TVHPHLDSPLGVHLS 172
           T HPH+    G H S
Sbjct: 174 TQHPHMQPQQGQHQS 188


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 164 FQWPP*YQRLHRVIGF 117
           +Q+PP     H ++GF
Sbjct: 42  YQYPPLNPMWHGILGF 57


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 164 FQWPP*YQRLHRVIGF 117
           +Q+PP     H ++GF
Sbjct: 8   YQYPPLNPMWHGILGF 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,294
Number of Sequences: 438
Number of extensions: 1580
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)