Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K08
(246 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g28395.3 68414.m03491 expressed protein 30 0.25
At1g28395.2 68414.m03490 expressed protein 30 0.25
At1g28395.1 68414.m03489 expressed protein 30 0.25
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 26 3.0
At3g54540.1 68416.m06035 ABC transporter family protein similar ... 26 3.0
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote... 26 3.0
At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS cla... 26 4.0
At4g02715.1 68417.m00367 expressed protein 25 5.3
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi... 25 5.3
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi... 25 5.3
At1g12550.1 68414.m01455 oxidoreductase family protein similar t... 25 5.3
At5g22140.1 68418.m02578 pyridine nucleotide-disulphide oxidored... 25 7.0
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote... 25 7.0
At1g10340.2 68414.m01165 ankyrin repeat family protein contains ... 25 7.0
At1g10340.1 68414.m01164 ankyrin repeat family protein contains ... 25 7.0
At5g28310.1 68418.m03437 oxidoreductase-related low similarity t... 25 9.2
At4g31650.1 68417.m04495 transcriptional factor B3 family protei... 25 9.2
At3g55670.1 68416.m06185 hypothetical protein various predicted ... 25 9.2
At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote... 25 9.2
At3g17970.1 68416.m02286 chloroplast outer membrane translocon s... 25 9.2
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 25 9.2
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 25 9.2
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 25 9.2
At1g30240.1 68414.m03699 PELP1-related contains weak similarity ... 25 9.2
>At1g28395.3 68414.m03491 expressed protein
Length = 95
Score = 29.9 bits (64), Expect = 0.25
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 208 SAFRFPLRSPSFSKVFNGPLNISDCI 131
+AFR P +SP +++F P+ +S C+
Sbjct: 35 TAFRMPKQSPLTNRIFRSPVELSCCV 60
>At1g28395.2 68414.m03490 expressed protein
Length = 95
Score = 29.9 bits (64), Expect = 0.25
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 208 SAFRFPLRSPSFSKVFNGPLNISDCI 131
+AFR P +SP +++F P+ +S C+
Sbjct: 35 TAFRMPKQSPLTNRIFRSPVELSCCV 60
>At1g28395.1 68414.m03489 expressed protein
Length = 95
Score = 29.9 bits (64), Expect = 0.25
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 208 SAFRFPLRSPSFSKVFNGPLNISDCI 131
+AFR P +SP +++F P+ +S C+
Sbjct: 35 TAFRMPKQSPLTNRIFRSPVELSCCV 60
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 174 SLKFSMAPLISAIASGNWLFNK*RNKVTWYPTEAEQHSP*SPDQSTPNNS 25
S KF+ AP SAIAS + LF K + P + SP +P+ P ++
Sbjct: 824 SSKFAPAPKSSAIASRSALFEKIPPQEPSIPKPVKA-SPKTPESPAPESN 872
>At3g54540.1 68416.m06035 ABC transporter family protein similar to
ABC50 GI:10863747 from [Rattus norvegicus]
Length = 723
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 1 RFKSGKRLGIVGSGLIGRSW---AMLFRFSRIPRNFVPLFVEKPI 126
R GKR G++G +G+S + +R +P+N L VE+ +
Sbjct: 184 RISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 228
>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
kinase, putative
Length = 980
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 113 LKSQLPDAIADIKGAIENFRERWTPKGE-SKC 205
+KS PD++ +G IE RW P+G+ KC
Sbjct: 889 MKSHYPDSL---EGIIEQALSRWKPQGKPEKC 917
>At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 422
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 22 LGIVGSGLIGRSWAMLFRFSRIPRNF-VPLFVEKPITRCNR 141
+GI G G IG++ + + I NF V +FV+K C++
Sbjct: 195 IGIWGPGGIGKTTLARYAYEEISSNFKVHVFVDKAEKICHQ 235
>At4g02715.1 68417.m00367 expressed protein
Length = 205
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 223 IRNCSSAFRFPLRSPSFSKVFNGP 152
IR CSS F RS S+S+++ GP
Sbjct: 103 IRRCSSEFVDKRRSLSYSELWAGP 126
>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 56 HGLCCSASVGYHVTLFRYLLKSQL 127
HGLC + + +F+YL KS++
Sbjct: 476 HGLCSYGKLDTALVIFKYLQKSEM 499
>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 736
Score = 25.4 bits (53), Expect = 5.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 156 PLKTLEKDGLLRGNLNADEQ 215
P+K +EKDG+ + LN +++
Sbjct: 647 PIKVVEKDGIAKEELNEEDE 666
>At1g12550.1 68414.m01455 oxidoreductase family protein similar to
glyoxylate reductase from Homo sapiens (gi:6002730);
contains Pfam D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain PF02826
Length = 323
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 10 SGKRLGIVGSGLIG 51
SGKR+GIVG G IG
Sbjct: 151 SGKRVGIVGLGSIG 164
>At5g22140.1 68418.m02578 pyridine nucleotide-disulphide
oxidoreductase family protein contains Pfam profile
PF00070 Pyridine nucleotide-disulphide oxidoreductase
domain
Length = 365
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 7 KSGKRLGIVGSGLIGRSWAMLFRF 78
K GKR+ ++G G+ G A L +F
Sbjct: 9 KQGKRVVVIGGGIAGSLAAKLLQF 32
>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1007
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 146 YQRLHRVIGFSTNSGTKLRGIRLKRNNIAHDLPISPLPTIPNL 18
+ +L VI + KL + L NN + LP+ T+ NL
Sbjct: 402 HNQLSGVIPSNLFISAKLTELNLSNNNFSGSLPLQDASTVGNL 444
>At1g10340.2 68414.m01165 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 574
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 41 D*SGDHGLCCSASVGYHVTLFRYLLKSQLPDAIADIKGAIENFR 172
D SG+ L +ASV + L RY++ + D + K E F+
Sbjct: 270 DESGNTVLHIAASVSFDAPLIRYIVGKNIVDITSKNKMGFEAFQ 313
>At1g10340.1 68414.m01164 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 578
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 41 D*SGDHGLCCSASVGYHVTLFRYLLKSQLPDAIADIKGAIENFR 172
D SG+ L +ASV + L RY++ + D + K E F+
Sbjct: 274 DESGNTVLHIAASVSFDAPLIRYIVGKNIVDITSKNKMGFEAFQ 317
>At5g28310.1 68418.m03437 oxidoreductase-related low similarity to
glyoxylate reductase from Thermococcus litoralis
[gi:13515409]
Length = 233
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 1 RFKSGKRLGIVGSGLIG 51
+++S KR+GIVG G IG
Sbjct: 110 QYQSKKRIGIVGLGSIG 126
>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 493
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 20 GWELLGVD*SGDHGLCCSASVGYHVTLFRYLLKSQLPDAIADIKGAIENFRERWTPKGES 199
GW+ L + + G C+ + ++ + + L S+LP A A+ + +RW+ + S
Sbjct: 192 GWKSLCTESKLEVGDSCTFKLLHNAKMPVFRLCSKLPKAGAEARPLKRARVQRWSQESRS 251
Query: 200 K 202
K
Sbjct: 252 K 252
>At3g55670.1 68416.m06185 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 218
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 141 LILRGPLKTLEKDGLLRGNLNADEQFRMC 227
L+ PLK KDGL+ G N + C
Sbjct: 47 LLNLSPLKNFHKDGLVSGKWNEPKDVPEC 75
>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
similar to lethal leaf-spot 1 from Zea mays
[gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
domain
Length = 537
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 211 SSAFRFPLR---SPSFSKVFNGPLNIS 140
S +FPL+ SPS SK+F+ PL ++
Sbjct: 25 SPTTKFPLKVSISPSRSKLFHNPLRVA 51
>At3g17970.1 68416.m02286 chloroplast outer membrane translocon
subunit, putative similar to Toc64 [Pisum sativum]
GI:7453538; contains Pfam profile PF00515 TPR Domain
Length = 589
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 107 YLLKSQLPDAIADIKGAIENFR 172
YL + + + D KGAIE+FR
Sbjct: 545 YLRRGTAREMLGDCKGAIEDFR 566
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 7 KSGKRLGIVGSGLIGRS 57
KSG+R GI SG +G+S
Sbjct: 215 KSGRRSGIFKSGFLGKS 231
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 16 KRLGIVGSGLIGRSWAMLFRFSRIPRNFVPLFVEKPITR 132
KRL + +G SW F + P F+PL ++ + +
Sbjct: 584 KRLFLEKTGNTWESWEQKTNFQKQPGKFLPLDIDYGVNK 622
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 125 IGFSTNSGTKLRGIRLKRNNIAHD--LPISPLPTI 27
+ +ST G+ L +L+ I D LP++P+P +
Sbjct: 3595 VAYSTGLGSGLSRFKLRMQGIQVDNQLPLAPMPVL 3629
>At1g30240.1 68414.m03699 PELP1-related contains weak similarity to
PELP1 [Homo sapiens] gi|21426922|gb|AAC17708
Length = 873
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 53 LPISPLPTIPNLFPDLN 3
LP+ LPT+ N FP+ N
Sbjct: 684 LPLDGLPTLSNRFPESN 700
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,841,184
Number of Sequences: 28952
Number of extensions: 107869
Number of successful extensions: 354
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 60
effective length of database: 10,333,440
effective search space used: 217002240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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