Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K07
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 1.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 1.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 3.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.0
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.0
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 5.3
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 5.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.3
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 25 5.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.0
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|... 25 7.0
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 7.0
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 25 9.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 9.3
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 531 TILQKKLLLPVLIILGYYCTSYPWYVLVNVRI 436
++ Q+ L+ V II + T Y WYV V +++
Sbjct: 407 SVTQEDLISKVAIISETFATDYEWYVDVTIQL 438
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 332 SPLHASSPGLPPAH 291
SPLHA+S LPP+H
Sbjct: 43 SPLHANSVSLPPSH 56
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 368 VLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 255
+ P++Y+R +S + A P PP + +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 502 CSHYFRLLLYFLSMVCTRKRSY 437
CS LL+ FL+MVC+ K Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 460 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 365
V TR+R + R C +CR ++ ++P + C
Sbjct: 20 VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -1
Query: 483 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 334
+YC + W +N Y G + A +F+S+ S Y+ + + S G
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRG 573
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 382 GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 483
G+VS YC + PG + V+ IP+ S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 528 ILQKKLLLPVLIILG---YYCTSYPWYVLVN 445
I Q K+LL ++ + ++ +Y WY+LVN
Sbjct: 705 IWQPKILLGIMYVTDLVLFFLDTYLWYILVN 735
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 5.3
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = -2
Query: 437 YTPGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSA-- 264
Y P VP P P++T LP R PP S P PP S +L +SA
Sbjct: 1033 YEPPTVSVPS---PSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPV-STALPSSSAVS 1088
Query: 263 SPPRNVLCAA*HLSLSTYGSLT 198
PP + ST LT
Sbjct: 1089 RPPIATSAGRSSTAASTSAPLT 1110
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 16 DIALIRLMVTAPYTDFVRPICLPSLDYTQQPPADFEMYVAGW 141
D + + +FV P CL + +T+ F ++VA W
Sbjct: 43 DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW 84
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 398 P*LTDPTITKVLPTSYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 255
P + + + ++P S + PP S A++P LPP+ S + S +PP
Sbjct: 1487 PAVPNVPVPSMIP-SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535
>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 70 PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKQHVKLPYVDR 222
P C S YT Q + + WG+ + F G V + VK P V++
Sbjct: 58 PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 7.0
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 47 HRIQILYG-PSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTL 202
H +L G P V + +RN Q+L P TS L+LV V +N TL
Sbjct: 198 HEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTL 250
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 384 ICQLRTEILRHKEHPRRIYERLRVHTMDKKYN 479
IC L + H HP IY R+ + K YN
Sbjct: 78 ICSLFLSLKYHHLHPEYIYS--RISKLGKSYN 107
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 159 ELLVHSPTGDVHFKICRGL 103
ELL+ G+ H+ +CRGL
Sbjct: 1701 ELLLRMEDGNYHWHLCRGL 1719
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,524
Number of Sequences: 5004
Number of extensions: 57415
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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