Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K05
         (452 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   1.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.4  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   7.1  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   7.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    20   9.4  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 428 SWLGRVPRRARCTLSTSWGH 369
           SW GR P+RA   LS +  H
Sbjct: 36  SWPGRPPKRAPVGLSLAASH 55



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 395 CTLSTSWGHSSPSRA 351
           CT ++SW    P RA
Sbjct: 31  CTTASSWPGRPPKRA 45


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 293 LYDFEAAEDNELTFLAGETVHVTDSSDPNWWKGYNER 403
           LY+  A  D++   L    +H+ D    + +K Y  R
Sbjct: 166 LYNHTANYDSKYLVLPSGELHIRDVGPEDGYKSYQCR 202


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +2

Query: 344 ETVHVTDSSDPNWWK 388
           + +H    + PNWW+
Sbjct: 85  KVIHHLIENKPNWWQ 99


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +2

Query: 344 ETVHVTDSSDPNWWK 388
           + +H    + PNWW+
Sbjct: 85  KVIHHLIENKPNWWQ 99


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 35 RRRACRPGI 9
          RRRA RPG+
Sbjct: 41 RRRAARPGV 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,395
Number of Sequences: 336
Number of extensions: 508
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)