Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K05
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879...    30   1.0  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    29   1.3  
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    27   7.1  
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456...    27   9.3  
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149     27   9.3  

>03_02_0481 +
           8789890-8789949,8790325-8790441,8790532-8790601,
           8790688-8790836,8791520-8791621,8791692-8791892,
           8792589-8792651,8792791-8793009,8793681-8793755,
           8794003-8794101,8794521-8794691
          Length = 441

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 293 LYDFEAAEDNELTFLAGETVHVTDSSDPNWWKGYNERGEGLFPANFVTDETSA 451
           ++ F+A  D EL+   G+ V V   +   W +G  +   G FP+ +V     A
Sbjct: 329 IHPFDAQADGELSISVGDYVVVRQVAPNGWSEGECKGKAGWFPSAYVEQRDKA 381


>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 293  LYDFEAAEDNELTFLAGETVHVTDSSDPNWW 385
            LYDF A  D+EL+  AGE V +    D  W+
Sbjct: 1090 LYDFTAGGDDELSLTAGEDVEIEYEVD-GWY 1119


>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 368 SDPNWWKGYNERGEGLFPAN 427
           SDPN+ K + +RG  LF AN
Sbjct: 70  SDPNYTKSWYDRGAKLFQAN 89


>08_01_0525 +
           4564885-4565221,4565337-4565476,4565582-4565677,
           4566079-4566146,4566542-4566643,4567492-4567630,
           4567758-4567898,4568241-4568297,4568400-4568459,
           4568866-4568973,4569834-4569994,4570453-4570531,
           4571357-4571490,4571846-4571951,4572244-4572432,
           4572595-4572822,4573028-4573183,4573491-4573532,
           4573752-4573868,4573945-4574121
          Length = 878

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 450 ALVSSVTKLAGKSPSPRSLYPFHQLGSLESVTCTVS 343
           A+V + T+    + +P  LY F  +GSLE+V  + S
Sbjct: 163 AVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYS 198


>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
          Length = 272

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 428 SWLGRVPRRARCTLSTSWGHSSPSRALSRP 339
           +W   +  R +    T WGHS  S ++S P
Sbjct: 191 AWQSAIDSRWQAPHDTHWGHSRSSSSISMP 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,445,730
Number of Sequences: 37544
Number of extensions: 77112
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)