Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K05
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    27   7.8  
At1g48540.2 68414.m05428 leucine-rich repeat family protein            27   7.8  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            27   7.8  

>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 436 RNEVGWEESLAALVVPFPPVGVTRVRHVHCLAREERQLIVLRRLEVVE 293
           RN   W + L ALV+    VG++  +   CLA    +L+  R  +++E
Sbjct: 552 RNVASWNDPLDALVLGVHQVGLSGWKQEECLA-IGNELLAWRERDLLE 598


>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 444 VSSVTKLAGKSPSPRSLYPFHQLGSLESVTC--TVSPARNV 328
           V S      + P+P SL+PF  L  LE   C  + SPA+ +
Sbjct: 91  VVSTLPSPARDPTPLSLFPFGSLKVLELRRCDLSTSPAKGL 131


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 444 VSSVTKLAGKSPSPRSLYPFHQLGSLESVTC--TVSPARNV 328
           V S      + P+P SL+PF  L  LE   C  + SPA+ +
Sbjct: 91  VVSTLPSPARDPTPLSLFPFGSLKVLELRRCDLSTSPAKGL 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,773,823
Number of Sequences: 28952
Number of extensions: 53963
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)