Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K04
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.49 
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    27   2.0  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   3.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    25   4.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   7.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.9  
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    25   7.9  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    25   7.9  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
 Frame = +1

Query: 70   DVEMLARLILG--GMNVANDDAKMFHMMTMFRKMLSYNQYNMDKYTYVPTALDMYTTCLR 243
            D  + + LI G  G     DD   +H M +    L  + Y   K  +   AL   TTC  
Sbjct: 1526 DFNVESSLITGLRGKTKKEDDLVKYHNMILKTIELLSSSYPELKQIWGEVALSWATTC-- 1583

Query: 244  DPVFWKIMKRVMNSFVLFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDLDI 411
                    +   NSF LF+++LP +    L     ++   +S++  +++ +Y ++I
Sbjct: 1584 -----PSRRLACNSFQLFRSLLPDFDARMLLEIISRLVGTISDE-TSYLRDYSVEI 1633


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 289 VLFKNMLPSYTREELDFPGVKVERVVSEKMVTF--MDEYDLDITN 417
           +L +N LPSYT EEL F   +   ++S   +     D Y + + N
Sbjct: 176 LLIENPLPSYTSEELKFNWEERRLLISMGFLILAGTDSYGISLPN 220


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -1

Query: 443 ISAWSR*SAFVISRSYSSIKVTIFSDTTRS 354
           +S+  R  +F+++   SS+K+T+F D+ ++
Sbjct: 868 LSSDDRIKSFIVAPDDSSVKITLFDDSQKT 897


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -1

Query: 407 SRSYSSIKVTIFSDTTRSTLTPGKSSSSR 321
           S S+SS  V+  S T+ STLT   SSSSR
Sbjct: 365 SSSFSST-VSSSSSTSSSTLTSSSSSSSR 392


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 190 DKYTYVPTALDMYTTCLRDPVFW---KIMKR 273
           DKY   P A D+ T CL +P  +   K++KR
Sbjct: 93  DKYKDRPIARDLGTVCLHNPKLFQGNKLLKR 123


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 381 DHLFRYNAFNFDTREIKFLASITRQHVFEKHERVHDAFHYLPE 253
           D L  YN  NFD   +   A   R H F    R+H+ F    E
Sbjct: 375 DVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRIHNFFSVAKE 417


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 378 HLFRY-NAFNFDTREIKFLASITRQHVFEKHERVHDAFHYLPEYWIS 241
           HL ++ ++F FD  +++ L S     +  +  + H    +   YW+S
Sbjct: 299 HLLQFCSSFEFDHEQLEKLESFGASSLLIELSQEHRLDEFFVSYWVS 345


>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 388 MDEYDLDITNALYLDQAEMQRRSL 459
           M++  +D +NALY  Q  +QRR L
Sbjct: 14  MEKAHMDSSNALYRVQRPLQRRPL 37


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 426 VKRIRDIQVIFIHKGDHLFRYNAFNFDTREIKFLASITRQHVFEKHERVHD 274
           VK   D   +F+   ++LF  N    ++ +  F   + R H F+K   V D
Sbjct: 139 VKYWSDFNRLFLDT-EYLFPVNCSELNSSDFSFQLGVERFHDFDKQFNVWD 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,460
Number of Sequences: 5004
Number of extensions: 45664
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)