Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_K04
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 31 0.48
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 29 2.0
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 28 3.4
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 4.5
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 27 6.0
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 27 6.0
03_02_1034 + 13555569-13556084,13556096-13556527 27 6.0
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 27 7.9
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 7.9
02_05_0313 - 27795152-27795268,27795476-27795515,27795773-277958... 27 7.9
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 27 7.9
01_05_0645 - 23899579-23904483 27 7.9
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 31.1 bits (67), Expect = 0.48
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 157 RKMLSYNQYNMDKYTYVPTALDMYTTCLRDPVF--WKIMKRVM 279
R+M+SY+ + TY+P +++ C+R+P F W++ +++M
Sbjct: 155 REMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 156 EHCHHMEHFGIVIGH-IHATEDKSGKHFHVFGF 61
E CH M GIV+GH + EDK + F ++ F
Sbjct: 468 EKCHFMVREGIVLGHRVFEREDKIMEKFIIYFF 500
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 286 FVLFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDL 405
F++ N Y + L+FP VKV ++ E + D DL
Sbjct: 420 FMVLNNFFSDYPDKPLEFPSVKVNQIELESNIAEEDLDDL 459
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 169 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKIMKRVMNSFVLFKNMLPSYT 321
SY Y ++ + + ++ CL D VFWK + F+L K +LP Y+
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +1
Query: 328 ELDFPGVKVERVVSEKMVTFMDEYDLDITNALYLDQAEMQRR 453
E+++ GVK++ V K ++ +YDL + + + + R
Sbjct: 64 EIEYNGVKLDEFVPAKTSAYVSQYDLHVADMTVRETLDFSAR 105
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 169 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKIMKRVMNSFVLFKNMLPSYT 321
SY Y ++ + + ++ CL D + FWK + F+L K +LP Y+
Sbjct: 449 SYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFLLRKLILPFYS 504
>03_02_1034 + 13555569-13556084,13556096-13556527
Length = 315
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 10 ILTGKIERRDGTMINLK---KPEDVEMLARLILGGMNVANDDA 129
+L+G R DG ++ + P D+ L R+ L G NV D+A
Sbjct: 218 LLSGFATRSDGPELDDQLELTPRDIRRLVRMALKGKNVERDEA 260
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 268 KRVMNSFVLFKNMLPSYTREELDFPG 345
++V+N+ L N PSY + +D PG
Sbjct: 795 EQVVNTIYLHDNSFPSYLPKSMDLPG 820
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 268 KRVMNSFVLFKNMLPSYTREELDFPG 345
++V+N+ L N PSY + +D PG
Sbjct: 1152 EQVVNTIYLHDNSFPSYLPKSMDLPG 1177
>02_05_0313 -
27795152-27795268,27795476-27795515,27795773-27795873,
27796862-27796921,27797185-27797294,27797911-27798033,
27798148-27798271,27798585-27798642,27798713-27798841,
27799602-27799762
Length = 340
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 160 KMLSYNQYNMDKYTYVPTALDMYTTCLRDPVFWKIMKRVMNSFVLFKNMLPSYTRE 327
K L Q N + Y +PT Y + + VFW+ K V FK + S+ R+
Sbjct: 47 KFLEALQLNHNYYEMLPTYWSPYLHMIANNVFWR-TKNTAFVAVEFKYLYKSFDRD 101
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 344 VSKLNALYLKRWSPLWMNMTWISRMRFTWTRLRCKEE 454
V N+LYL R++ +NM R+ T +L C EE
Sbjct: 345 VISTNSLYLSRYAKN-LNMNSYQRIEITKPKLECNEE 380
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 268 KRVMNSFVLFKNMLPSYTREELDFPG 345
++V+N+ L N PSY + +D PG
Sbjct: 1072 EQVVNTIYLHDNSFPSYLPKSMDLPG 1097
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,351
Number of Sequences: 37544
Number of extensions: 280612
Number of successful extensions: 717
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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