Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K04
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)                       33   0.16 
SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)                29   2.7  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.6  
SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)            28   4.6  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 590

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 234 SSVHIESSGNVRVLVHIILIVTQHFSEHCHHMEH 133
           SS+   SS ++ ++ HII+I+T   + H HH  H
Sbjct: 394 SSLTSSSSPHLSIITHIIIIITPLANHHSHHHHH 427


>SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 348 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 253
           D+R  KF AS  R   FE H R+    HY P+
Sbjct: 2   DSRGSKFFASSFR--TFENHRRISSGRHYFPK 31


>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
          Length = 329

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 175 NQYNMDKYTYVPTALDMYTTCLRDPVFWKIM 267
           NQ NM ++  VPT  ++  TCL   +F  +M
Sbjct: 290 NQCNMSEHYRVPTRSEITKTCLEPNIFQNLM 320


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 292 LFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDLDITNALYL 429
           L ++ L   + E+ D   V+  RV+SE+    + + DLD  +++YL
Sbjct: 505 LSQHTLELSSEEDHDMDDVRNSRVLSEEARNILSDLDLDNNHSVYL 550


>SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 348 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 253
           D+R  KFLA   R   FE H R+    HY P+
Sbjct: 2   DSRGSKFLAGSFR--TFENHRRISSDRHYFPK 31


>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 250 VFWKIMKRVMNSFVLFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDLDITNAL 423
           V W    RV  +    K +  S+ R+E DFP + +E    E +VT +    L +TN L
Sbjct: 817 VEWSCDNRVQLNADKCKELRISFARQERDFPPISIEGKEIE-VVTSVKLVRLTLTNNL 873


>SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 348 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 253
           D+R  KF AS  R   FE H R+    HY P+
Sbjct: 2   DSRGSKFFASSFR--TFENHRRISSDRHYFPK 31


>SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)
          Length = 152

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 210 GNVRVLVHIILIVTQHFSEHCHHMEH-FGIVIGHIHATEDKSGKH 79
           G + + +  + IVT H  +H HH  H  G  +G  +    KS +H
Sbjct: 10  GVIIIAISTVAIVTGHLQQHHHHHFHQCGHYLGLNYPFVPKSSRH 54


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 48   DQSEETRRRGNACQTYPRWHECGQ*RCQNVPYDDNVQKNAELQSV 182
            DQ+ E +R   A Q+ PR  E      QN  Y+DNV ++ E+Q+V
Sbjct: 2317 DQAREMQR---AAQSQPRVSEISA-AVQNT-YEDNVNQDQEMQAV 2356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,219
Number of Sequences: 59808
Number of extensions: 346669
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)