Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K02
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.0  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   5.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   6.9  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 483 NGREHSSEHLLG*VFPSVPQTGAYMKVQTQGSASSHVPSFT 361
           N    +  ++L    PS+ Q   Y  +Q  GS+++ +PSF+
Sbjct: 158 NAYSFTGSNILPTQSPSLNQMQDYQNLQQNGSSNTTIPSFS 198


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 201 NIPSIFILCYCLWHK 157
           ++PSI+ILC+C  H+
Sbjct: 34  SLPSIYILCHCSKHQ 48


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 346 QRFENRERGYV*GSRSLRLY 405
           Q  +  +RGYV G R+LRLY
Sbjct: 901 QHKDTYDRGYVRGLRTLRLY 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,827
Number of Sequences: 5004
Number of extensions: 43918
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)