Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K02
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    29   2.3  
03_06_0047 + 31266940-31268394                                         29   3.0  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    27   9.2  
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    27   9.2  

>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 187 YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 354
           Y  ++S R  AN   ++N  A+  RV+      +R  + DLP    L++REG +  RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564


>03_06_0047 + 31266940-31268394
          Length = 484

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 263 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 409
           R +   C  D  TY     ++CE DK    LK+ K    ++  P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 435  SVPQTGAYMKVQTQGSASSHVPS 367
            S  Q G+ M+ Q+QG ASS +PS
Sbjct: 1668 STVQNGSQMQQQSQGPASSAIPS 1690


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 438 PSVPQTGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQYKRHWL 307
           PSVP+     +  T  S+ +   + T+F  +  +SLS Y RH L
Sbjct: 291 PSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQISLSSYLRHSL 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,246
Number of Sequences: 37544
Number of extensions: 294745
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)