Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J23
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   100   2e-22
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    94   8e-21
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   0.83 
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   4.4  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   4.4  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   7.7  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    25   7.7  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 99.5 bits (237), Expect = 2e-22
 Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
 Frame = +2

Query: 2   DINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISL 181
           DI   H RK +R++  S++V               T+++FN+ IL+RLF S+ NRPPIS+
Sbjct: 4   DIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63

Query: 182 SRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAG 343
           S++A     K  + EG   V+VGTV++D RL TVPK++VAAL  T+ ARARIL AG
Sbjct: 64  SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAG 119



 Score = 61.7 bits (143), Expect = 5e-11
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +3

Query: 345 GEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 461
           GE+LT DQLALRAPTG  TVL++G+++AREA RHFG  P
Sbjct: 120 GEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGP 158


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 94.3 bits (224), Expect = 8e-21
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
 Frame = +2

Query: 2   DINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISL 181
           DI   H +K +R++  S++V               T+++FN+ IL+RLF S+ NRPPIS+
Sbjct: 4   DIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63

Query: 182 SRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAG 343
           S++A     K  + +    VVVGTV++D R+ TVPK+++AAL  T+ ARARIL AG
Sbjct: 64  SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAG 119



 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 345 GEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 461
           GE+LT DQLALRAPTG  TVLV+G+++AREA RHFG  P
Sbjct: 120 GEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGP 158


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 163 PTSDFFVPFGTPHEEAYTRGFDRCSR 240
           P +D F+PF TP  +AY +   R  R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 342 EGEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 458
           E E+L  D++  + P G K  + Q ++  R A++H+  A
Sbjct: 115 ETELL--DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 390 GRKTVLVQGRRNAREAVRHFGPAPGA 467
           G    L Q RR     V HFG APG+
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGS 869


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 98  PSICTVLPIVSSTHPET*LRCAELSCRVYD 9
           P +CTVLPI+   +    +    + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 111 FVRLAKYLYSFTN 73
           F  LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,348
Number of Sequences: 5004
Number of extensions: 35209
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)