Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J23
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 99 9e-22
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 98 4e-21
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 97 8e-21
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 0.82
04_04_1516 - 34122205-34122348,34122430-34122534,34122878-341230... 28 4.4
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961... 27 5.8
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 27 7.6
01_01_0512 + 3735005-3735580 27 7.6
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 99 bits (238), Expect = 9e-22
Identities = 54/108 (50%), Positives = 68/108 (62%)
Frame = +2
Query: 20 DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 199
++K +RT KS DV T + FN +ILRRLFMS+ NRPP+SL RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 200 MKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAG 343
M+ +E IAV+VGTV++D R+Y VP M VAAL TE ARARI+ G
Sbjct: 71 ME--GKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTG 116
Score = 56.0 bits (129), Expect = 1e-08
Identities = 32/59 (54%), Positives = 37/59 (62%), Gaps = 17/59 (28%)
Frame = +3
Query: 345 GEILTFDQLALRAPTGRKT-----------------VLVQGRRNAREAVRHFGPAPGAP 470
GE LTFDQLALRAP G+ T VL++G +NAREAV+HFGPAPG P
Sbjct: 117 GECLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVP 175
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 97.9 bits (233), Expect = 4e-21
Identities = 54/114 (47%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Frame = +2
Query: 20 DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 199
++K +RT +S+DV T + FN +IL+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 200 M--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAG 343
M K P R + IAV+VGTV++D R+Y VP M VAAL TE ARARI+ AG
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAG 124
Score = 73.3 bits (172), Expect = 9e-14
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +3
Query: 345 GEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAP 470
GE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P
Sbjct: 125 GECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP 166
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 96.7 bits (230), Expect = 8e-21
Identities = 51/108 (47%), Positives = 68/108 (62%)
Frame = +2
Query: 20 DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 199
++K +RT +S DV T + FN +IL+RLFMS+ NRPP+SL RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 200 MKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAG 343
M + E IAV+VGTV++D R+ +PKM V AL TE ARARI+ AG
Sbjct: 71 M-EGKEENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAG 117
Score = 70.9 bits (166), Expect = 5e-13
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +3
Query: 345 GEILTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAP 470
GE LTFDQLALRAP G TVL++G +NAREAVRHFG APG P
Sbjct: 118 GECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVP 159
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.3 bits (65), Expect = 0.82
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 298 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 137
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>04_04_1516 -
34122205-34122348,34122430-34122534,34122878-34123005,
34124003-34124072
Length = 148
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 415 P*TSTVLRPVGARRANWSNVRISPSSSQDAGTSFLSNV 302
P TS PVG +W + PS S AG FL N+
Sbjct: 17 PPTSCSAGPVGEDMFHWQATIMGPSDSPFAGGVFLVNI 54
>03_06_0570 -
34794678-34795115,34795339-34795920,34796008-34796146,
34796261-34796402,34796504-34796621,34796713-34796820,
34796894-34796968,34797774-34798003,34798086-34798388,
34798949-34799130,34800288-34800371,34800799-34801391
Length = 997
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 400 VLRPVGARRANWSNVRISPSSSQDAGTSFLSNV 302
V PV A A+ + SPSSS++AG + + NV
Sbjct: 46 VATPVPAAEASGLALNSSPSSSEEAGAASVRNV 78
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 466 APGAGPK*RTASRALRRP*TSTVLRPVGARRANWSNVRISPSSSQDAGTS 317
A AG + R + RRP T + L P G+R A S+ +P+S A +S
Sbjct: 66 AEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSSRISAPTSPSSAPSS 115
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 145 VYEPYQPTSDFFVPFGTPHEEAYTRGFDRCSR 240
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,741
Number of Sequences: 37544
Number of extensions: 256937
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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