Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J22
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   0.73 
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    28   0.73 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   0.97 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   3.0  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   5.2  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   5.2  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   5.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   6.8  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    24   9.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   9.0  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    24   9.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    24   9.0  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -1

Query: 272 SVTRAPLDHSLSPDHGWTSLPTSAQGSSLQRPRCSAALCGTSQSAPESSWLT*RPNSPAH 93
           S +  P+  S S  H  +S  +S+  SS  RP  S++   T  S+   S +T  P+S + 
Sbjct: 204 SSSSVPITSSTSSSHS-SSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262

Query: 92  TNAT 81
           + ++
Sbjct: 263 STSS 266


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 124 QLLSGALCDVPHRAALHLGRWRLLPCAEVGSDVQPWSGDKLWSR 255
           QLL+    D   R  L    W  +P   V      WS D+LWS+
Sbjct: 264 QLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSNDRLWSK 307


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 336 QAHEIPRSVHQPVNVALSTSVPTAITNIAT 425
           Q +E   S+H+PVN A ST+     +N +T
Sbjct: 365 QLYEANASIHRPVNPAFSTNFGLEASNTST 394


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 95  GRDCSAATSASCSPGRSVTYRTGLRYTSAAG 187
           G + S ATS+  S  RSV Y    R+TS  G
Sbjct: 271 GSNFSRATSSRSSKTRSVVYEPNHRHTSFFG 301


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 300 RYIDTGAERVCNPSPSGPQFVPRPRLDVTPYFCTRQQPPAAEV 172
           R I + +++   PS   P     P   V P   +  QPPAA V
Sbjct: 495 RDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPV 537


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   YYSSFIPCCFAQSYLYYDVYGAAQQVAF 90
           +Y  F+ C F  SYL Y  +GAA+ + F
Sbjct: 105 FYIPFVLCAFPFSYL-YKRFGAARILPF 131


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 120 DVAAEQSRPYECHLLRCSVHIVVQIRLCK 34
           +  A  + P +C  LR + H+V++ R CK
Sbjct: 13  EAGASLTFPMQCSALRKNGHVVIKGRPCK 41


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 120 DVAAEQSRPYECHLLRCSVHIVVQIRLCK 34
           +  A  + P +C  LR + H+V++ R CK
Sbjct: 13  EAGASLTFPMQCSALRKNGHVVIKGRPCK 41


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 194 SSLQRPRCSAALCGTSQSAPESSW-LT*RPNSPAHTNATCCAA 69
           S L    CS  LCG +++ P   +    RP+S +H + T C A
Sbjct: 435 SLLSSQPCS--LCGFNRTQPLRQFEFRSRPDSTSHASCTYCVA 475


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 85  AFVWA--GLFGRYVSQLLSGALCDVPHRAALHL 177
           +  WA  G  G Y + L SGAL D+  R  LH+
Sbjct: 213 SLAWAPNGNGGIYEALLSSGALNDMNRRGILHI 245


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 261 SPSGPQFVPRPRLDVT 214
           +P+ P  VPRPR+D+T
Sbjct: 576 NPANPIPVPRPRVDLT 591


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 333 FQAHEIPRSVHQPVNVALSTS 395
           F AH IP+ VH+   V LS +
Sbjct: 80  FAAHAIPKDVHKETPVFLSAT 100


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 244 LWSRGARVTDPLGAGVYVASTATVAAQPACSKHTR 348
           +W RGA+ +  L  G+  A+ +T ++  + S H R
Sbjct: 501 IWRRGAKQSLQLHGGIVHATVSTPSSIKSLSWHRR 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,182
Number of Sequences: 5004
Number of extensions: 35582
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)