Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J22
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)               31   0.56 
SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.97 
SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_6277| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     27   5.2  
SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9)                        27   5.2  
SB_8861| Best HMM Match : Mu-conotoxin (HMM E-Value=2.4e-05)           27   5.2  
SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)                 27   6.9  
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                27   9.1  
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                27   9.1  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)                     27   9.1  

>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 278 RGSVTRAPLDHSLSPDHGWTSLPTSAQGSSLQR-PRCSAALCGTSQSAPESSWLT*RPNS 102
           R S  R P     +P  G ++  T   GSS+QR PR  +   GT +S   S+  T    S
Sbjct: 448 RSSSQRTPRSAQRTPRSGSSAQRTPRSGSSVQRTPRSGSLAQGTPKSG-SSAQRTPSSGS 506

Query: 101 PAHT 90
            AHT
Sbjct: 507 SAHT 510


>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
          Length = 533

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 16/64 (25%), Positives = 23/64 (35%)
 Frame = +2

Query: 62  CTEQRSRWHSYGRDCSAATSASCSPGRSVTYRTGLRYTSAAGGCCLVQK*GVTSNRGRGT 241
           C   +  W  +G+  +      C+PG   +   G R  S     C   K G  S+R    
Sbjct: 85  CKYNQIEWVKHGKIVACQACPQCTPGEESSLMCGTRIESGTLSVCRPCKEGTYSDRFDAI 144

Query: 242 NCGP 253
            C P
Sbjct: 145 PCKP 148


>SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 78  AGGIRMGGTVRPLRQPAALRGAL*RTAQGCATPR 179
           +G +R GG  RP R+P  ++GA   T Q    PR
Sbjct: 95  SGQLRFGGRDRPFRRPLPIQGAGEETKQDDVIPR 128


>SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  QVAFVWAGLFGRYVSQLLSGALCDV-PHRAALHLGRWRLLPCAEVGS 216
           +VA V + L GRYV  LLSG  C V   R+ L L + R    A V S
Sbjct: 315 EVATVRSLLSGRYVRSLLSGRYCQVATARSLLSLLQGRYCKVATVRS 361


>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1634

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 211 GSDVQPWSGDKLWSRGARVTDPLGAGVYVASTATVAAQ 324
           G +  PW   K++SR A + DP+G    V   A +  Q
Sbjct: 863 GKEKGPWIKRKIFSRVAHLYDPIGYTAAVVIKAKIGIQ 900


>SB_6277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 358 LRGISCAWNMRAAPRPLPWTLHRHRRREGL*PEPLWTTV 242
           L G+ C W + A P P+ WT       +   P  LW  +
Sbjct: 24  LVGMVCDWTIGATPTPVSWTGQVWTINQSNLPVTLWHVI 62


>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 153 YVTERPGEQLADVAAEQSRPYECHLLRCSVHIV 55
           Y+++ P +Q      EQ+RP E +L   + H++
Sbjct: 653 YISDIPPKQAQSTIQEQNRPLESYLKAVAAHVM 685


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 112 RYVSQLLSGALCDVPHRAALHLGRWRLLPCAEVGSDVQPWSGDKLWSRGARVTD 273
           + ++ + S A    PH  AL + + +    AE+G DV+ WS D+L S G  + D
Sbjct: 119 KLINTIASTAEFSYPHARAL-IAKVK----AEIGDDVKTWSVDQLKSVGKFLKD 167


>SB_9549| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 241

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 131 SPGRSVTYRTGLRYTSAAG 187
           SP +S    TGLRYTSA G
Sbjct: 82  SPSQSACLATGLRYTSAKG 100


>SB_8861| Best HMM Match : Mu-conotoxin (HMM E-Value=2.4e-05)
          Length = 440

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
 Frame = +2

Query: 38  HSRICTTMCTEQRSRWHSYGRDCSA---ATSASCS-PGRSVTYRTGLRYTSAAG---GCC 196
           H R CT    E  S    +GR C+       + CS  GR+ T R     +  +G    C 
Sbjct: 182 HGRACTVRRNENESDCSGHGRACTVRRNENESDCSGHGRACTVRRNENESDCSGHGSACT 241

Query: 197 LVQK*GVTSNRGRGTNC 247
           + +    +   G G  C
Sbjct: 242 VSRNENASDCSGHGKAC 258



 Score = 27.1 bits (57), Expect = 6.9
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
 Frame = +2

Query: 38  HSRICTTMCTEQRSRWHSYGRDCSA---ATSASCS-PGRSVTYRTGLRYT--SAAGGCCL 199
           H R CT    E  S    +GR C+       + CS  GR+ T R     +  S  G  C 
Sbjct: 56  HGRACTVRRNENESDCSGHGRACTVRRNENESDCSGHGRACTVRRNENASDCSGHGSACT 115

Query: 200 VQK*GVTSN-RGRGTNC 247
           V +    S+  G G  C
Sbjct: 116 VSRNENESDCSGHGRAC 132



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
 Frame = +2

Query: 38  HSRICTTMCTEQRSRWHSYGRDCSA---ATSASCS-PGRSVTYRTGLRYT--SAAGGCCL 199
           H R CT    E  S    +GR C+       + CS  GR+ T R     +  S  G  C 
Sbjct: 128 HGRACTVRRNENESDCSGHGRACTVRRNENESDCSGHGRACTVRRNENESDCSGHGRACT 187

Query: 200 VQK*GVTSN-RGRGTNC 247
           V++    S+  G G  C
Sbjct: 188 VRRNENESDCSGHGRAC 204



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
 Frame = +2

Query: 38  HSRICTTMCTEQRSRWHSYGRDCSAA---TSASCS-PGRSVTYRTGLRYT--SAAGGCCL 199
           H R CT    E  S    +GR C+ +     + CS  G++ T R     +  S  G  C 
Sbjct: 326 HGRACTVRRNENESDCSGHGRACTVSRNENESDCSGHGKACTVRRNENESDCSGHGSACT 385

Query: 200 VQK*GVTSN-RGRGTNC 247
           V +    S+  G G  C
Sbjct: 386 VSRNENESDCSGHGRAC 402


>SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)
          Length = 642

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 342 HEIPRSVHQPVNVALSTSVPTAIT 413
           H++P S H P  V   TSVP  +T
Sbjct: 449 HDLPMSAHAPSWVKRKTSVPRVLT 472


>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1227

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = -1

Query: 362 NTAWNLVCLEHAGCXXXXXXXXXXXXXPRGSVTRAPLDHSLSPDHG 225
           NT  N V    AG                G     PLDHSL  DHG
Sbjct: 268 NTVVNNVGRNLAGDKATSNAKENALNAAHGVKYTVPLDHSLLTDHG 313


>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
 Frame = -3

Query: 201 TRQQPPAAEV*RSP--VRYVTERPGEQLADV-------AAEQSRPYECHLLRCSVHIVVQ 49
           T+  P A    R P  VR   +   E+LAD         A  + P +C  LR + H+V++
Sbjct: 563 TQSVPIATTESRYPTRVRQTPKTMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIK 622

Query: 48  IRLCK 34
            R CK
Sbjct: 623 GRPCK 627


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 78  AGGIRMGGTVRPLRQPAALRGAL*RTAQGCATPRPLEAAALCRS 209
           AGG  +     P   P    GA+    + C++P+PL   A C S
Sbjct: 314 AGGYNLWSDWSPC--PVTCGGAMQLRTRNCSSPKPLNGGADCSS 355


>SB_7486| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 535

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 300 RYIDTGAER-VCNPSPSGPQFVPRPRLDVTPYFCTRQQPPA 181
           R++    ER +C P P+  +   +PR D  P   T ++PP+
Sbjct: 132 RFLVRNNERNMCMPGPNFTESPEKPRPDFKPINDTTEKPPS 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,290
Number of Sequences: 59808
Number of extensions: 353774
Number of successful extensions: 1377
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)