Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J22
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical... 48 2e-06
AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical... 46 2e-05
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 37 0.006
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 37 0.006
AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (... 31 0.49
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 1.1
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical pr... 27 8.0
U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-link... 27 8.0
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 27 8.0
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 27 8.0
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 27 8.0
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 27 8.0
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 27 8.0
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 27 8.0
AF099914-9|AAC68759.2| 273|Caenorhabditis elegans Math (meprin-... 27 8.0
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 27 8.0
>AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical
protein D1007.5a protein.
Length = 477
Score = 48.4 bits (110), Expect = 2e-06
Identities = 44/142 (30%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Frame = +1
Query: 4 AYYSSFIPCCFA---------QSYLYYDVYGAAQQVAFVWAGLFGRYVSQLLSGALCDVP 156
A+ S +PC F Q L +V+ Q V F YV+ L D+
Sbjct: 262 AFLSIMLPCIFVPFKTSQGIPQKILINEVW-ECQLAIVVGLTAFSLYVAYLSPLNYLDLL 320
Query: 157 HRAALHLGRWRLLPCAEVG------SDVQPWSGDKLWSRGARVTDPLGAGVYVAST---A 309
HRAA+HLG W + +G S PWS L++ G V P G S+
Sbjct: 321 HRAAIHLGSWHQIEGPRIGHTGSMSSAPTPWSEFCLYNDGETVQMPDGRCYRAKSSNSIR 380
Query: 310 TVAAQPACSKHTRFHAVFINPS 375
TVAA P S+H F V P+
Sbjct: 381 TVAAHPESSRHNTFFKVLRKPN 402
>AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical
protein D1007.5b protein.
Length = 402
Score = 45.6 bits (103), Expect = 2e-05
Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Frame = +1
Query: 4 AYYSSFIPCCFA---------QSYLYYDVYGAAQQVAFVWAGLFGRYVSQLLSGALCDVP 156
A+ S +PC F Q L +V+ Q V F YV+ L D+
Sbjct: 262 AFLSIMLPCIFVPFKTSQGIPQKILINEVW-ECQLAIVVGLTAFSLYVAYLSPLNYLDLL 320
Query: 157 HRAALHLGRWRLLPCAEVG------SDVQPWSGDKLWSRGARVTDPLGAGVYVAST---A 309
HRAA+HLG W + +G S PWS L++ G V P G S+
Sbjct: 321 HRAAIHLGSWHQIEGPRIGHTGSMSSAPTPWSEFCLYNDGETVQMPDGRCYRAKSSNSIR 380
Query: 310 TVAAQPACSKHTRF 351
TVAA P S+H F
Sbjct: 381 TVAAHPESSRHNTF 394
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 37.1 bits (82), Expect = 0.006
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -3
Query: 336 GTCGLRRDRCRGRYIDTGAERVCNPSPSGPQFVPRPRLDVTPYFCTRQQPPAAEV*RSPV 157
G CG + RC G Y++T CN +P + RP VT + + P A+ +P
Sbjct: 542 GGCGTQSRRC-GTYVETV---YCNTNPCTGGYCCRPFFYVTSFGTGYCRRPGADTPAAPQ 597
Query: 156 RYVTERPG 133
RYV +R G
Sbjct: 598 RYVEQRKG 605
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 37.1 bits (82), Expect = 0.006
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = -3
Query: 336 GTCGLRRDRCRGRYIDTGAERVCNPSPSGPQFVPRPRLDVTPYFCTRQQPPAAEV*RSPV 157
G CG + RC G Y++T CN +P + RP VT + + P A+ +P
Sbjct: 542 GGCGTQSRRC-GTYVETV---YCNTNPCTGGYCCRPFFYVTSFGTGYCRRPGADTPAAPQ 597
Query: 156 RYVTERPG 133
RYV +R G
Sbjct: 598 RYVEQRKG 605
>AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (grd
related) protein13 protein.
Length = 273
Score = 30.7 bits (66), Expect = 0.49
Identities = 19/67 (28%), Positives = 23/67 (34%)
Frame = -3
Query: 336 GTCGLRRDRCRGRYIDTGAERVCNPSPSGPQFVPRPRLDVTPYFCTRQQPPAAEV*RSPV 157
G CG R +C C PSP G QF P PY +PP + +
Sbjct: 24 GGCGCRPQQCGCAAASLPVRSYCPPSPCGRQFQSFPSY-TQPYSPVSFRPPPPTIIQQQP 82
Query: 156 RYVTERP 136
Y P
Sbjct: 83 YYSVPHP 89
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 264 PSPSGPQFVPRPRLD-VTPYFCTRQQPPAAE 175
P P P F+P+P P T+QQPP +E
Sbjct: 267 PPPPQPAFLPQPPTSYAPPVAATQQQPPVSE 297
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 327 RMFQAHEIPRSVHQPVNVALS 389
RM Q+ + PRS+ QP++ AL+
Sbjct: 1349 RMLQSRQTPRSIDQPMDYALT 1369
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 327 RMFQAHEIPRSVHQPVNVALS 389
RM Q+ + PRS+ QP++ AL+
Sbjct: 1349 RMLQSRQTPRSIDQPMDYALT 1369
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 327 RMFQAHEIPRSVHQPVNVALS 389
RM Q+ + PRS+ QP++ AL+
Sbjct: 1349 RMLQSRQTPRSIDQPMDYALT 1369
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 327 RMFQAHEIPRSVHQPVNVALS 389
RM Q+ + PRS+ QP++ AL+
Sbjct: 1349 RMLQSRQTPRSIDQPMDYALT 1369
>Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical
protein R07B7.3 protein.
Length = 355
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 213 PYFCTRQQPPAAEV*RSPVRYVTERPGEQLADVAAE 106
P F +QQP +V RS VRYV RP Q +V +
Sbjct: 294 PRFQRQQQPQQQQVVRS-VRYVNARPPVQRNNVVRQ 328
>U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform d protein.
Length = 245
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 1 GAYYSSFIPCCFAQSYLYYDVYGAAQQVA 87
G Y S + F YLY+ +Y AA+++A
Sbjct: 173 GMYISYYWTTLFVMLYLYWGIYRAAKKLA 201
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 1 GAYYSSFIPCCFAQSYLYYDVYGAAQQVA 87
G Y S + F YLY+ +Y AA+++A
Sbjct: 173 GMYISYYWTTLFVMLYLYWGIYRAAKKLA 201
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 1 GAYYSSFIPCCFAQSYLYYDVYGAAQQVA 87
G Y S + F YLY+ +Y AA+++A
Sbjct: 173 GMYISYYWTTLFVMLYLYWGIYRAAKKLA 201
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 1 GAYYSSFIPCCFAQSYLYYDVYGAAQQVA 87
G Y S + F YLY+ +Y AA+++A
Sbjct: 173 GMYISYYWTTLFVMLYLYWGIYRAAKKLA 201
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 1 GAYYSSFIPCCFAQSYLYYDVYGAAQQVA 87
G Y S + F YLY+ +Y AA+++A
Sbjct: 173 GMYISYYWTTLFVMLYLYWGIYRAAKKLA 201
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 1 GAYYSSFIPCCFAQSYLYYDVYGAAQQVA 87
G Y S + F YLY+ +Y AA+++A
Sbjct: 173 GMYISYYWTTLFVMLYLYWGIYRAAKKLA 201
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 1 GAYYSSFIPCCFAQSYLYYDVYGAAQQVA 87
G Y S + F YLY+ +Y AA+++A
Sbjct: 173 GMYISYYWTTLFVMLYLYWGIYRAAKKLA 201
>AF099914-9|AAC68759.2| 273|Caenorhabditis elegans Math
(meprin-associated traf homology)domain containing
protein 18 protein.
Length = 273
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 431 HNCSNISDSCRHRSRQSNIDGLMNTAWNL 345
H NIS + +R SN++ NT W L
Sbjct: 12 HTFKNISSLKENENRYSNVERRYNTPWKL 40
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 327 GLRRDRCRGRYIDTGAERVCNPSPSGP 247
G++ ++ RG +D G +R + SPSGP
Sbjct: 975 GIQSNQNRGFQMDLGMDRPWSDSPSGP 1001
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,433
Number of Sequences: 27780
Number of extensions: 238521
Number of successful extensions: 757
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -