Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J21
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.44 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   1.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.4  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   7.2  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   9.5  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   9.5  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 32/124 (25%), Positives = 56/124 (45%)
 Frame = -1

Query: 647  AELSSELGAGCDRSLHTRVTGSRSPSGPHCSVAPSNFNSSGST*ASRSTFLWLGMTTSDA 468
            +E SS +G+G D +  +  T   S S    SVA S   +S S+ +S S+   +  +T+ +
Sbjct: 910  SETSSVVGSGTDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAAS 969

Query: 467  RPSPSERLFVPISTLCGVLGSTNASITCTSALSCNSGWLLCLFVLK*SNISVGICNFCGT 288
                S      I+T   V GS+ +S+   SA   ++  +    V   S  SV   +   +
Sbjct: 970  ATGSSTS---SIAT-ASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASVTDS 1025

Query: 287  AMST 276
            + S+
Sbjct: 1026 STSS 1029


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 650  SAELSSELGAGCDRSLHTRVTGSRSPS--GPHCS 555
            S+ LSS +G G   S +++VT ++ PS   PH S
Sbjct: 3657 SSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSS 3690


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 557 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLCGVLGSTNAS 393
           SV PS+ N+  +   S +  +WL MT    +P PS  ++ P S    V+   + S
Sbjct: 252 SVTPSSINNHTAVPLSPTLAVWLPMTQPTFQP-PSANVYQPASNANQVITPVSIS 305


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
 Frame = -1

Query: 593 VTGSRSPSGPHCSVAPSNFNSSGST*ASRSTFLWLGMTTSDARP---SPSERLF---VPI 432
           V+ +  PS     V+ S+ + S S   + STF  L  +TS ++P   S S   F    P 
Sbjct: 144 VSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPT 203

Query: 431 STLCGVLGSTNASITCTSALSCNSGWL 351
           ST    L S++   + +S  S +S  L
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTL 230


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 223  DLRQDGEENIQTDIKNVVVLIAVPQKLQIPTDILDYLRTNKQSNQPELQDRADVQVMEAF 402
            D  QD      T    +V L+ +   L  P D+  YL  +++  +  L+   +   +EAF
Sbjct: 1289 DADQDVRVLATTSFATLVKLVPLEAGLPDPPDLPQYLLDSREKERKFLEQMLNPSKVEAF 1348

Query: 403  VEP 411
              P
Sbjct: 1349 SIP 1351


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 235 DGEENIQTDIKNVVVLIAVPQKL 303
           DG+EN++ +IK +V +   PQKL
Sbjct: 51  DGDENLKKNIKVLVPVNEKPQKL 73


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 430 EIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGER 582
           +I T + +   G A EV   S    +  A  + DE+ L G+ E+  PE ER
Sbjct: 59  QIATYDLATLPGTAKEV---SAYGPEGAAAAEEDEIDLFGSDEEEDPEAER 106


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 457 LQNDYSYRSQLYVEY*ALQTPP*PVHRLCPVTRAGCSVCSSSS 329
           +QN  S R+     +  L TP  P H++   TRA  S+  +++
Sbjct: 24  IQNILSARTLKICRFRFLPTPSHPTHKMAQETRAISSISEAAN 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,226
Number of Sequences: 5004
Number of extensions: 55278
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)