Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J21
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 32 0.46
08_01_0303 + 2493388-2493954 31 0.60
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 31 0.60
05_07_0144 - 28007477-28008412 30 1.8
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 29 2.4
02_05_0994 - 33369971-33370759,33370856-33370956,33371092-333710... 29 3.2
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 29 4.2
03_04_0006 + 16257288-16259522 29 4.2
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041 29 4.2
10_01_0168 - 1883380-1883594,1884572-1888325 28 5.6
06_03_0592 + 22585546-22588573,22588680-22589032 28 5.6
02_05_0015 - 24992253-24993993,24995331-24995695 28 7.4
01_07_0384 + 43209423-43210241 28 7.4
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052 28 7.4
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179... 27 9.8
09_04_0615 + 18972227-18972250,18972293-18972397,18973492-189735... 27 9.8
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598... 27 9.8
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 27 9.8
02_04_0238 + 21186072-21186883,21187315-21189346 27 9.8
02_02_0258 - 8374442-8375083 27 9.8
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -1
Query: 557 SVAPSNFNSSGST*ASRSTFLWLGMTTSDARPSPSERLFVPISTLCGVLGSTNASITCTS 378
S A +++NSSG++ + W G+T S RP+ L +P S L G L ++T
Sbjct: 43 SSALASWNSSGASFCN-----WEGVTCSRRRPTRVASLSLPSSNLAGTLSPAIGNLTFPR 97
Query: 377 ALSCNSGWL 351
L+ +S L
Sbjct: 98 RLNLSSNGL 106
>08_01_0303 + 2493388-2493954
Length = 188
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 179 LRRCSRQRSPHPYSTTYGKTGRKTFKPISKTSLYS 283
L RCSR+R P P +TT T R++ + SL+S
Sbjct: 28 LHRCSRRRRPSPLTTTVALTRRRSPAAVRCFSLHS 62
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 147 SLDSDCARRTLASLLPAIREPVLRPSCRLQRDKFRAPPPR 28
S+ SDC+ + LLP +R +L P CR + APP R
Sbjct: 4 SILSDCSSSATSRLLP-LRRALLAPPCRFRPATVAAPPRR 42
>05_07_0144 - 28007477-28008412
Length = 311
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 16 AGAPPRWRRSKLVPLQSARGSKDWFADCR*KRRESTPRAVTVQRSLI 156
A PP W R +L+PL RG CR KR E++ + R LI
Sbjct: 130 APPPPAWIRGELLPLLGLRGDLPLHFICR-KRVEASDLSAQQSRFLI 175
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 418 PHRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGERDPVTL 597
P R E + R+ D + +VIPS V+ V+ ++ + G + CG E+D L
Sbjct: 452 PPRCEETASERAPADNSRA-IVIPSAEPVE---DVELSDIDVRGLCKMCGNPEEKDKRFL 507
Query: 598 VC 603
VC
Sbjct: 508 VC 509
>02_05_0994 -
33369971-33370759,33370856-33370956,33371092-33371093,
33373009-33373610
Length = 497
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +1
Query: 328 YLRTNKQSNQPELQDRADVQVMEAFVEPNTPHRVE--IGTNN-RSEGDGR 468
YL ++ N+P++ D +V+VME PN+P ++ IGT +++ +G+
Sbjct: 349 YLEELEKPNKPKMDD--EVEVMEQMSTPNSPEDIKRPIGTKTAKAQRNGK 396
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 240 GGKH-SNRYQKRRCTHRSTAKVADTY 314
GG+H S RY +RR H ++AK A ++
Sbjct: 8 GGQHDSQRYSRRRGCHETSAKAAQSF 33
>03_04_0006 + 16257288-16259522
Length = 744
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 270 RRCTHRSTAKVADTYRYIGLLEDEQTEQPARVTGQSR 380
RR + S +V + YR+I + + EQP ++T ++R
Sbjct: 305 RRKSQFSDVRVEEQYRHIEIFDVASPEQPVKITQKTR 341
>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
Length = 425
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +1
Query: 328 YLRTNKQSNQPELQDRADVQVMEAFVEPNTPHRVE--IGTNN-RSEGDGR 468
YL ++ N+P++ D +V+VME PN+P ++ +GT +++ +G+
Sbjct: 277 YLEELEKPNKPKMDD--EVEVMEQMSTPNSPEDIKRPVGTKTAKAQRNGK 324
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = -3
Query: 489 WDDNLRRTAVTFRTIIRTDLNSMWSIRLYKRLHNLYIGSVL*LGLVALFVRPQVIQYIGR 310
+DD LR+ + T RT++ N+ SI + +L G L + L +RP ++++ R
Sbjct: 547 FDDFLRKQSTTLRTLLYPTWNTYGSIHHLSKCISLR-GLQL-YEIKELPIRPIKLKHL-R 603
Query: 309 YLQLLRYCD 283
YL L CD
Sbjct: 604 YLNLSENCD 612
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 383 TSALSCNSGWLLCLFVLK*SNISVGICN 300
+S LS N W+LC F+ +IS+ ICN
Sbjct: 4 SSVLSPNIAWVLCHFIF--CSISLAICN 29
>02_05_0015 - 24992253-24993993,24995331-24995695
Length = 701
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +1
Query: 133 VTVQRSLIARIMLIIFASLFATAFAAPVFYDLRQDGEENIQTDIKNVVVLIAVPQKLQIP 312
V+ +++L A +L + S + A V DLR EENI++ +KN V +A P
Sbjct: 483 VSARKTLEAVDILKLMTSTYIVALCQAV--DLRHL-EENIKSSVKNCVTQVAKKVLTMNP 539
Query: 313 TDILDYLRTNKQS 351
T L R ++++
Sbjct: 540 TGDLSSARFSEKN 552
>01_07_0384 + 43209423-43210241
Length = 272
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 467 RPSPSERLFVPISTLCGVLGSTNASITCTSALSCNSGW 354
RP S + ST G+++ASI T+ +S N+G+
Sbjct: 204 RPRQSSSASISTSTSTSYTGTSSASINMTTMISLNNGF 241
>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
Length = 495
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 400 FVEPNTPHRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQVD-PDELKLLGATEQCGPEG 576
++EP H +EIG G +S+ +PS + + L+ + +E KLL +C P
Sbjct: 309 YLEPRM-HELEIGNTTIEAGTKMSSDKTVPSVKILALKVRFGIRNEAKLLPVFLRCFPNV 367
Query: 577 E 579
E
Sbjct: 368 E 368
>10_06_0078 +
10416950-10417174,10417595-10417679,10417782-10417900,
10418200-10418287,10419400-10419452,10419876-10420015,
10420094-10420166,10420243-10420311,10420632-10420844,
10422304-10422498,10422581-10422658,10423456-10423590
Length = 490
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 479 TSDARPSPSERLFVPISTLCGVLGSTNASITCTSALSCNSGW 354
TS + P LFV + LC L TN +I + N+G+
Sbjct: 351 TSVSEELPKAPLFVSLHNLCATLKCTNPTIATFQSAIRNAGY 392
>09_04_0615 +
18972227-18972250,18972293-18972397,18973492-18973584,
18973887-18973993,18974107-18974157,18974675-18974928,
18975176-18975221,18975896-18976127
Length = 303
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 277 VLIAVPQKLQIPTDIL--DYLRTNKQSNQPELQDRADVQVMEAFVEPNTPHRVEIGTNNR 450
+ ++V Q+ I +L TNK+ + D + V E ++ HR E
Sbjct: 86 LFVSVRQQNTIANSVLLESDANTNKKKHSSTNHDNDQLGVTEIQIQNPCSHRSEHDATRA 145
Query: 451 SEGDGRAS 474
EG+G+A+
Sbjct: 146 GEGEGKAA 153
>06_03_0792 +
24658324-24658763,24659167-24659387,24659765-24659827,
24659849-24660102
Length = 325
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 451 SEGD-GRASEVVIPSQRNVDLEAQVDPDE 534
++GD G+ +EV P D+EA+VD D+
Sbjct: 111 TDGDSGKENEVATPDAEKEDVEAEVDGDD 139
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 409 ALQTPP*PVHRLCPVTRAGCSVCSS 335
AL T P P H +CP+ + SV SS
Sbjct: 721 ALPTQPPPEHFICPILKVPVSVSSS 745
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 360 GLVALFVRPQVIQYIGRYLQLLRYCDEYNDVFDIGL 253
GL A + ++I + +YL+ +RYC +D++ I +
Sbjct: 249 GLEAAWDEGKLIHEVRKYLRFVRYCVVLDDIWSISV 284
>02_02_0258 - 8374442-8375083
Length = 213
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 440 VPISTLCGVLGSTNASITCTSALSCNSGWLLCL 342
V S CG+L +A C + L + WLLCL
Sbjct: 57 VAYSVFCGMLFPWSALRRCLAPLPSAARWLLCL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,392,611
Number of Sequences: 37544
Number of extensions: 418438
Number of successful extensions: 1323
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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