Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J21
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1) 31 0.81
SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 29 2.5
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.3
SB_47291| Best HMM Match : PilN (HMM E-Value=0.75) 28 5.7
SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04) 28 5.7
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6) 28 5.7
SB_11224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_57781| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +1
Query: 139 VQRSLIA---RIMLIIFASLFATAFAAPVFYDLRQDG 240
++R+LI R++LI+F LF+ AF +P FY +R G
Sbjct: 139 MKRTLITSRVRLVLIVFTWLFSAAFFSPSFYTMRLVG 175
>SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)
Length = 248
Score = 31.1 bits (67), Expect = 0.81
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Frame = +1
Query: 106 KRRESTPRAVTVQRSLIARIMLIIFASLFATAFAAPVFYDLRQDGEENIQTDIKNVVVLI 285
+ E +P ++ +A +L I A + V + +Q+ + N Q V++
Sbjct: 80 RENEKSPMFEQARQFRVAAAVLFIAAMILVVT----VLWATKQETDRNRQMSRNQAVLVS 135
Query: 286 AVPQKLQIPTDILDYLRTNKQSNQPELQDRADVQVMEAFVEPNTP-HRVEIGTNNRSE-- 456
AV + + TD D + Q + L++ + E+ + T H IGT+ +
Sbjct: 136 AVTAEGLLKTDAPDLPHPHVQVHHT-LEEVCQLCADESLPKYETALHCASIGTSKTASLT 194
Query: 457 GDGRAS---EVVIPSQRNVDLEAQVDPDEL 537
GR + E+ S N+ + QVD DEL
Sbjct: 195 HSGRTTPDMEIDNDSSTNISVYVQVDEDEL 224
>SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Frame = +1
Query: 139 VQRSLIA---RIMLIIFASLFATAFAAPVFYDLR 231
++R+LI R++LI+F LF+ AF +P FY ++
Sbjct: 143 MKRTLITSRVRVLLIVFTWLFSAAFLSPSFYTMQ 176
>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 742
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +1
Query: 325 DYLRTNKQSNQPELQDRADVQVMEAFVEPNTPHRVEIGTNNRSEGDGRASEV-VIPSQRN 501
D+L+TNK+S + E ++ + +++ ++ ++ +N +S G++S++ +P Q
Sbjct: 105 DHLKTNKKSRKNETPEKDSSENVKSPIKCELSESIQ-HSNTKSRKPGKSSDLSAVPKQEL 163
Query: 502 VD----LEAQVDPDELKLLGATEQCGP 570
+ LE + D + + G +E+C P
Sbjct: 164 LGTCLLLEEKEDVEMGGVDGESEKCKP 190
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 29.5 bits (63), Expect = 2.5
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Frame = +1
Query: 295 QKLQIP-TDILDYLRTNKQSNQPELQDR----------ADVQVMEAFVEPNTPHRVEIGT 441
+KL +P + + D L ++ SN P QDR D + + F P T + I
Sbjct: 963 EKLVLPDSSVSDLLGQHQASNNPSTQDRQENKATGAPFPDSSISDLFDAPQTVRKSAIED 1022
Query: 442 NNRSEGDGRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGER--DPVTLVCRL 609
+ + + S++ P V+L +P K + G +G R DP T R+
Sbjct: 1023 SPKITSENSTSDIPFPESSIVELLTD-EPKAKKKASSGAGRGKKGSRKDDPHTAGSRM 1079
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 382 VQVMEAFVEPNTPHRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQVD 525
V+++EA VE N V I TN R++GDG A++V RN+ L ++
Sbjct: 1424 VRIIEAIVE-NDGSAV-ISTNVRNDGDGYAADVGGVHVRNLQLSGPLN 1469
>SB_47291| Best HMM Match : PilN (HMM E-Value=0.75)
Length = 424
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -3
Query: 303 QLLRYCDEYNDVFDIGLNXXXXXXXXXVEYG 211
+L+ YCD +N +FD G YG
Sbjct: 324 RLIEYCDHFNSLFDFGQFEAAAIHAANSPYG 354
>SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)
Length = 474
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 129 ARRTLASLLPAIREPVLRPSCRLQ 58
A R AS+LP + PV PSCR Q
Sbjct: 357 AHRVDASILPIVSMPVSCPSCRCQ 380
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -1
Query: 641 LSSELGAGCDRSLHTRVTG-SRSPSGPHCSVAPSNFNSSGST*ASRSTFLWLGMTTSDAR 465
++ E A D ++ T S + P +VAP + SG+T A ++T L +
Sbjct: 3823 VAPETTAAADTTMAPETTAISETTFAPETTVAPESTVPSGTTAALKTTLGPLTDKRKETT 3882
Query: 464 PSPSERLFVPISTLCGVLGSTNASITCTSALS 369
SP ++ +P S + + ++ S+L+
Sbjct: 3883 LSPGGQIVLPTSAMKATAEAPETTMAQESSLA 3914
>SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)
Length = 261
Score = 28.3 bits (60), Expect = 5.7
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = +2
Query: 182 RRCSRQRSPHPYSTTYGKTGRKTFKPISKTSLYSSQYRKSCRYLPIYWIT*GRTNRATSP 361
R+ SR+ SP T KTGRKT P KTS +S K+ R W T +T R TSP
Sbjct: 18 RKTSRKTSPKTSRKTSRKTGRKT-SP--KTSPKTSP--KTGR--KTSWKTSTKTGRKTSP 70
>SB_11224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 123 RTLASLLPAI-REPVLRPSCRLQRDKFRAPPPRWSSS 16
R L SL I REPVL C PPPRWSS+
Sbjct: 28 RALLSLTSVIGREPVLS-QCPGDPLVLERPPPRWSSN 63
>SB_57781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 388 PVHRLCPVTRAGCSVCSSSSNPIY 317
P+HR+ T +G S CS+ SN Y
Sbjct: 5 PLHRVVHRTESGSSTCSTKSNDSY 28
>SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -3
Query: 156 DKRSLDSDCARRTLASLLPA----IREPVLRPSCRLQRDKFRAPPPRWSSS 16
D++ + D +AS LP+ +R+ S ++D PPPRWSS+
Sbjct: 233 DEKLKEGDWEPEEIASKLPSFLSFVRDVQRNFSLGDEQDVLERPPPRWSSN 283
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,567,448
Number of Sequences: 59808
Number of extensions: 467981
Number of successful extensions: 2951
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2947
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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