Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J21
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05680.1 68416.m00634 expressed protein                             30   1.2  
At5g24940.1 68418.m02953 protein phosphatase 2C, putative / PP2C...    30   1.5  
At2g35200.1 68415.m04317 expressed protein                             29   2.0  
At5g56310.1 68418.m07028 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At3g14090.1 68416.m01781 exocyst subunit EXO70 family protein  c...    28   4.7  
At2g44830.1 68415.m05582 protein kinase, putative similar to pro...    27   8.2  

>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 358  PELQ-DRADVQVMEAFVEPNTPHRVEIGTNNRSEGDGRASEVVIPSQRNVDLEAQ 519
            P LQ D   +Q     VE N+PH +   T + + G  + S +  P   NVD  AQ
Sbjct: 1602 PFLQPDENLMQPAPVMVEQNSPHSIVEETESDANGSSQFSHMGTPVASNVDENAQ 1656


>At5g24940.1 68418.m02953 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase type 2C - Lotus japonicus,
           EMBL:AF092432
          Length = 447

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +1

Query: 334 RTNKQSNQPELQDRADVQVMEAFVEPNTPHRVEIGTNNRSEGDGRASEVVIPSQRNVDLE 513
           R+   SNQ  +   A    + +     T  + ++    RS+ + ++S  V P+Q    + 
Sbjct: 344 RSADNSNQKPIATTATGHSVSSEQSGLTGEKSQMPIKIRSDSEPKSSAKV-PNQTQSTVH 402

Query: 514 AQVDPDELKLLGATEQCGPEGERD 585
             +D    K   ATEQ G  GER+
Sbjct: 403 NDLDSSTAKKPAATEQSGSTGERN 426


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 11 TKLELHRGGGALNLSRCSRHEGR 79
          T L L  GGG++   +CSRHEGR
Sbjct: 8  TNLRLDEGGGSV-WQKCSRHEGR 29


>At5g56310.1 68418.m07028 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 530

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 463 GRASEVVIPSQRNVDLEAQVDPDELKLLGATEQCGPEGERDPVTLVC 603
           GRASE +   QR   L   V+PDE+ LL     C   G  +    +C
Sbjct: 229 GRASEAIEVFQRM--LMENVEPDEVTLLAVLSACADLGSLELGERIC 273


>At3g14090.1 68416.m01781 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 623

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 240 GGKHSNRYQKRRCTHRSTAKVADTYRYIGLLEDEQTEQPARVTGQSRCTGYGGVCRA*YS 419
           GG  S+R  +RR ++RST+ +    R + L+  E       +  +    GY   C   Y 
Sbjct: 150 GGSGSSRLTRRRSSYRSTSSI----REMDLISPEAVSDLRSIVQRMVAAGYSRECIQVYG 205

Query: 420 T 422
           T
Sbjct: 206 T 206


>At2g44830.1 68415.m05582 protein kinase, putative similar to
           protein kinase PVPK-1 [Phaseolus vulgaris]
           SWISS-PROT:P15792
          Length = 765

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 150 RSLDSDCARRTLASLLPAIREP----VLRPSCRLQRDKF 46
           ++ DSD +RR    + PA  EP    +++PSC L R  F
Sbjct: 521 KTFDSDPSRRGAFCVQPACMEPTSACIIQPSCFLPRSIF 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,582
Number of Sequences: 28952
Number of extensions: 312650
Number of successful extensions: 959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)