Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J18
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   2e-22
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                63   1e-10
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   1e-08
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.050
SB_50185| Best HMM Match : CsrA (HMM E-Value=3.9)                      31   0.62 
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)              28   3.3  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_54624| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score =  101 bits (243), Expect = 2e-22
 Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
 Frame = +3

Query: 39  RKDLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATG 218
           ++D T+ EL++YDG +S   VL+AVNG +FDVT+G+               D++RGLAT 
Sbjct: 58  KRDFTLDELKEYDGLKSP-YVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLATF 116

Query: 219 QVAA-ADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDENDD 392
            +   A  +EYD  +DL   +  S +EWE+QF EKYD+VGRLLKPGE   +Y  +E  +
Sbjct: 117 SLGPEAIKDEYDDLSDLNGMQQDSLREWEQQFDEKYDLVGRLLKPGEKHQQYETEEETE 175


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 31/99 (31%), Positives = 52/99 (52%)
 Frame = +3

Query: 48  LTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQVA 227
           L+  +L K+DG+Q D  + +A+ G ++DV KGRR             RDST    TG   
Sbjct: 88  LSTEDLAKHDGSQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTGMFD 147

Query: 228 AADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLL 344
            A  +  D C++L  +++   K W E +++ Y  VG+++
Sbjct: 148 RA--KATDDCSNLKNEDLLGIKGWMEFYQKDYKYVGKVV 184


>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = +3

Query: 42  KDLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQ 221
           ++ TV EL+ YDG   +  + +AVNG +FDVT                 +D++R L T  
Sbjct: 72  REFTVRELKGYDGVNKE-LIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVTFS 130

Query: 222 V----AAADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLK 347
           V         +  D  NDL P +     E+E Q+ E+Y  VGRL++
Sbjct: 131 VDNFYQTEQRDSMDDLNDLNPLQRDCLFEYETQYMERYPCVGRLVE 176


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +3

Query: 48  LTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQVA 227
           L+  +L K+DG Q D  + +A+ G ++DV KGRR             RDST    T  V+
Sbjct: 272 LSTVDLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTVLVS 331

Query: 228 AADNEEYDPC 257
           + +   Y  C
Sbjct: 332 SVNGLMYPEC 341


>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = +3

Query: 42  KDLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQ 221
           K  T  EL  ++G  S+  + +AV G++FDV+  +              ++ +R +A   
Sbjct: 46  KLFTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSRAIAKWS 105

Query: 222 VAAAD-NEEYDPCNDLTPDEIAS-AKEWEEQFREKYDIVG 335
           +AA + N   D    LT DE+    K + + +  KY +VG
Sbjct: 106 LAAENMNGNLD---GLTKDELQRLEKNFHDVYMRKYPVVG 142


>SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +3

Query: 276 EIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDENDDXKSL*IK 413
           E   AK  EEQ R+K +   R +KP  + ++ SDDEND+ +SL I+
Sbjct: 224 EKKQAKADEEQ-RKKEEAARREMKPPTSDSENSDDENDELRSLIIQ 268


>SB_50185| Best HMM Match : CsrA (HMM E-Value=3.9)
          Length = 121

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +3

Query: 276 EIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDENDDXK 398
           E   AK  EEQ R+K +   R +KP  + ++ SDDEND+ +
Sbjct: 81  EKKQAKADEEQ-RKKEEAARREMKPPTSDSENSDDENDELR 120


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 273 DEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDEND 389
           D+    ++ + +F    D + R L PG  PN+ SDDE++
Sbjct: 354 DDDDDQEDLDGRFAAGQDAMYRPLSPGNKPNEESDDEDE 392


>SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)
          Length = 332

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 297 ILLQKRSHQELNHCTDHTLRYQLQPLV 217
           I+LQ+RSH E  +   HT   + QP V
Sbjct: 104 IVLQRRSHNEAQNALHHTRHSERQPAV 130


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 176 CVRSSGSVKPTSLCN 132
           CV  SGSV PT LCN
Sbjct: 349 CVMQSGSVTPTCLCN 363


>SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 219 QVAAADNEEYDPCNDLTPDEIASAKEWEEQ 308
           ++A    +EYDP  DL P  ++SAKE   Q
Sbjct: 143 KIACKVRDEYDPIKDLVP--VSSAKETHGQ 170


>SB_54624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 310 NCSSHSFAEAISSGVKSLHGSYSSLSAAATCPVAKPRVESLPAKA 176
           +C S    E  S  ++ + G  SS SAA TC   +  V  LP ++
Sbjct: 9   DCDSRLLVEDFSDLLQDVPGYCSSWSAARTCFSTRLHVNHLPMES 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,127,011
Number of Sequences: 59808
Number of extensions: 250259
Number of successful extensions: 753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)