Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J18
(464 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian... 78 3e-15
U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian... 78 3e-15
AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical ... 41 4e-04
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 30 0.71
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 30 0.71
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 30 0.71
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 30 0.71
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 30 0.71
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ... 30 0.71
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical... 29 2.2
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 28 2.9
Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical pr... 27 6.6
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 27 6.6
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 6.6
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 6.6
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 27 8.8
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 27 8.8
>U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform b
protein.
Length = 183
Score = 78.2 bits (184), Expect = 3e-15
Identities = 42/111 (37%), Positives = 60/111 (54%)
Frame = +3
Query: 45 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 224
D+TV ELRKYDG +++ +L +NG I+DVT+G+ D+TR L T
Sbjct: 49 DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 107
Query: 225 AAADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSD 377
A +E +D ++ DE +A EWE QF+ KY VGRL+K Y +
Sbjct: 108 NAVSSE-WDDHTGISADEQETANEWETQFKFKYLTVGRLVKNSSEKADYGN 157
>U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform a
protein.
Length = 198
Score = 78.2 bits (184), Expect = 3e-15
Identities = 42/111 (37%), Positives = 60/111 (54%)
Frame = +3
Query: 45 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 224
D+TV ELRKYDG +++ +L +NG I+DVT+G+ D+TR L T
Sbjct: 64 DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 122
Query: 225 AAADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSD 377
A +E +D ++ DE +A EWE QF+ KY VGRL+K Y +
Sbjct: 123 NAVSSE-WDDHTGISADEQETANEWETQFKFKYLTVGRLVKNSSEKADYGN 172
>AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical
protein H38K22.3 protein.
Length = 326
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/95 (24%), Positives = 44/95 (46%)
Frame = +3
Query: 51 TVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQVAA 230
T +L +DGT+ + LA+ G +++V + RD+TR TG
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDF-- 159
Query: 231 ADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVG 335
++ + L+ DE+ S ++W + ++Y +VG
Sbjct: 160 QESGLIATTHGLSHDELLSIRDWVSFYDKEYPLVG 194
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 30.3 bits (65), Expect = 0.71
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 295 NGKNNSEKNTT*LDVSLNQARHLTNIVMMKMTXKNHCKLRNRVDVQLKFNC 447
N ++N++ + + +DV +A HL M ++ KL+N+ ++L NC
Sbjct: 651 NSQSNTDMDVSEMDV-YRRASHLEEYAMQRVREIEENKLKNKKKIKLGLNC 700
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 30.3 bits (65), Expect = 0.71
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 295 NGKNNSEKNTT*LDVSLNQARHLTNIVMMKMTXKNHCKLRNRVDVQLKFNC 447
N ++N++ + + +DV +A HL M ++ KL+N+ ++L NC
Sbjct: 651 NSQSNTDMDVSEMDV-YRRASHLEEYAMQRVREIEENKLKNKKKIKLGLNC 700
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 30.3 bits (65), Expect = 0.71
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 295 NGKNNSEKNTT*LDVSLNQARHLTNIVMMKMTXKNHCKLRNRVDVQLKFNC 447
N ++N++ + + +DV +A HL M ++ KL+N+ ++L NC
Sbjct: 167 NSQSNTDMDVSEMDV-YRRASHLEEYAMQRVREIEENKLKNKKKIKLGLNC 216
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 30.3 bits (65), Expect = 0.71
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 295 NGKNNSEKNTT*LDVSLNQARHLTNIVMMKMTXKNHCKLRNRVDVQLKFNC 447
N ++N++ + + +DV +A HL M ++ KL+N+ ++L NC
Sbjct: 167 NSQSNTDMDVSEMDV-YRRASHLEEYAMQRVREIEENKLKNKKKIKLGLNC 216
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 30.3 bits (65), Expect = 0.71
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 295 NGKNNSEKNTT*LDVSLNQARHLTNIVMMKMTXKNHCKLRNRVDVQLKFNC 447
N ++N++ + + +DV +A HL M ++ KL+N+ ++L NC
Sbjct: 651 NSQSNTDMDVSEMDV-YRRASHLEEYAMQRVREIEENKLKNKKKIKLGLNC 700
>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
protein H04J21.1 protein.
Length = 1032
Score = 30.3 bits (65), Expect = 0.71
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 207 LATGQVAAADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDEN 386
L G + +N E NDL EI S YD+ +LKP E+P KYS D +
Sbjct: 49 LYNGHPSRLNNVEKCEKNDLF-SEILSILSLVSMIIYGYDVTAAILKPQESP-KYSPDSS 106
Query: 387 DDXKS 401
S
Sbjct: 107 TSSSS 111
>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
protein Y67D8C.9 protein.
Length = 1073
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 210 ATGQVAAADNEEYDPCNDLTPDEIASAKEWEEQFR 314
AT ++ N++Y +++ P E K WE+QF+
Sbjct: 261 ATFNISVRHNKKYTVLSNMPPVESHDHKSWEDQFK 295
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 297 WEEQFREKYDIV-GRLLKPGETPNKYSDDE 383
+EE F+EK ++ +LLK E PN+ D+E
Sbjct: 489 YEETFKEKAPLICAQLLKTPEPPNELDDNE 518
>Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical
protein F28B1.3 protein.
Length = 802
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 262 SLHGSYSSLSAAATCPVAKPRVESLPAKA 176
S++G + LS A CP +KP + PA++
Sbjct: 237 SVYGDLAYLSYALRCPCSKPTIFKSPAES 265
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 192 DSTRGLATGQVAAADNEEYDPCNDLTP 272
DS T QV+ NE+Y PC + P
Sbjct: 17 DSQYHQTTTQVSCGINEQYSPCTQMCP 43
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 255 CNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGET 359
C++ +E S E EE F+EK++ +K G+T
Sbjct: 477 CSECNIEEFHSVVEIEEHFKEKHEANHTCIKCGKT 511
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 255 CNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGET 359
C++ +E S E EE F+EK++ +K G+T
Sbjct: 477 CSECNIEEFHSVVEIEEHFKEKHEANHTCIKCGKT 511
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 294 EWEEQFREKYDIVGRLLKPGETP-NKYSDDENDDXKSL*IKK 416
+W F+E+YD+V +L P T S + D +L +++
Sbjct: 55 DWSSHFKEEYDLVEKLNSPQYTNLTSISPSSSTDSNNLILRQ 96
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 294 EWEEQFREKYDIVGRLLKPGETP-NKYSDDENDDXKSL*IKK 416
+W F+E+YD+V +L P T S + D +L +++
Sbjct: 55 DWSSHFKEEYDLVEKLNSPQYTNLTSISPSSSTDSNNLILRQ 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,554,055
Number of Sequences: 27780
Number of extensions: 177728
Number of successful extensions: 649
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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