Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J18
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein... 59 1e-09
At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein... 53 1e-07
At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein... 52 2e-07
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein... 48 4e-06
At4g11250.1 68417.m01821 MADS-box family protein contains Pfam p... 30 0.67
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 1.5
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 29 2.0
At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic... 29 2.0
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic... 29 2.0
At5g16300.2 68418.m01906 expressed protein 28 3.6
At5g16300.1 68418.m01905 expressed protein 28 3.6
At4g18000.1 68417.m02678 hypothetical protein 28 3.6
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 28 3.6
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 28 3.6
At5g38565.1 68418.m04663 F-box family protein contains F-box dom... 27 6.2
At3g17340.1 68416.m02216 importin-related contains Pfam profile ... 27 6.2
At5g65330.1 68418.m08218 MADS-box family protein contains Pfam p... 27 8.3
At1g78080.1 68414.m09099 AP2 domain-containing transcription fac... 27 8.3
>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 100
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/100 (28%), Positives = 51/100 (51%)
Frame = +3
Query: 45 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 224
+ T +L +Y+GT + +A+ G +FDVT G+ +D++R L G++
Sbjct: 2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRAL--GKM 59
Query: 225 AAADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLL 344
+ + + LT EI + +WE +F KY +VGR++
Sbjct: 60 SKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 99
>At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 220
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/113 (27%), Positives = 56/113 (49%)
Frame = +3
Query: 45 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 224
++T EL++YDG+ +L+A+ I+DVT+ R +D++R LA ++
Sbjct: 74 EITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALA--KM 131
Query: 225 AAADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDE 383
+ + + + L P E+ + ++WE +F KY VG + G P S E
Sbjct: 132 SFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSE 184
>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
similar to SP|O00264 Membrane associated progesterone
receptor component (mPR) {Homo sapiens}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 233
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/101 (28%), Positives = 53/101 (52%)
Frame = +3
Query: 45 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 224
++T EL+ YDG+ S +L+A+ G I+DV++ R +D++R LA ++
Sbjct: 70 EITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALA--KM 127
Query: 225 AAADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLK 347
+ D + + L E+ + ++WE +F KY VG + K
Sbjct: 128 SFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQK 168
>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
similar to SP|O15173 Membrane associated progesterone
receptor component 2 (Steroid receptor protein DG6)
{Homo sapiens}; contains Pfam profile PF00173:
Heme/Steroid binding domain
Length = 245
Score = 47.6 bits (108), Expect = 4e-06
Identities = 31/118 (26%), Positives = 50/118 (42%)
Frame = +3
Query: 51 TVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQVAA 230
+ EL Y+GT +LL + G +FDVTKG+ RD++R +G
Sbjct: 43 SAEELALYNGTDETLPILLGILGSVFDVTKGKFHYGSGGGYNHFAGRDASRAFVSGNFTG 102
Query: 231 ADNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDENDDXKSL 404
+ D L+ E+ S +W + Y VG+L+ +Y D + + K L
Sbjct: 103 --DGLTDSLQGLSSSEVKSIVDWRGFYSRTYTPVGKLV------GRYYDSQGNPTKHL 152
>At4g11250.1 68417.m01821 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL52
Length = 329
Score = 30.3 bits (65), Expect = 0.67
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 252 DHTLRYQLQPLVQSLNHE*SPCQRKLRTVLRVRKTDVPL*HQ 127
DH QL L+QSL S Q++LR V +K + L HQ
Sbjct: 109 DHYSPQQLSQLIQSLERTLSTLQKRLRIVESQKKQNTNLVHQ 150
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 258 NDLTPDEIASAKEWEEQFREKYD-IVGRLLKPGETPNKYSDDENDDXKSL 404
ND T D + KE ++ ++ ++ +GR+++ ++ + YS+ +NDD SL
Sbjct: 408 NDGTLDSKMNGKESGDRPKKGFNKALGRIIQGEDSDSDYSEPKNDDDPSL 457
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 240 EEYDPCNDLTPDEIASA 290
EE DPC DLT D+I +A
Sbjct: 410 EEVDPCEDLTDDDIRTA 426
>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 240 EEYDPCNDLTPDEIASA 290
EE DPC DLT D+I +A
Sbjct: 395 EEVDPCEDLTADDIRTA 411
>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 240 EEYDPCNDLTPDEIASA 290
EE DPC DLT D+I +A
Sbjct: 395 EEVDPCEDLTADDIRTA 411
>At5g16300.2 68418.m01906 expressed protein
Length = 1034
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 295 SFAEAISSGVKSLHGSYSSLSAAATCPVAK 206
S E+IS+ + S+HG+ SLS+++ K
Sbjct: 81 SLCESISANISSIHGNIRSLSSSSVAETPK 110
>At5g16300.1 68418.m01905 expressed protein
Length = 1068
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 295 SFAEAISSGVKSLHGSYSSLSAAATCPVAK 206
S E+IS+ + S+HG+ SLS+++ K
Sbjct: 81 SLCESISANISSIHGNIRSLSSSSVAETPK 110
>At4g18000.1 68417.m02678 hypothetical protein
Length = 46
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +3
Query: 231 ADNEEYDPCNDLTPDEIASAKEWEEQFREKYDI 329
++N++ + +TP+EI S K+W +F ++Y++
Sbjct: 7 SENKKVFSRSPMTPNEINSYKKWIIEFDDEYEV 39
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 281 RFCKRMGRTIQRKIRHS 331
RFC+ +GRT Q K RHS
Sbjct: 62 RFCRGVGRTAQAKNRHS 78
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 281 RFCKRMGRTIQRKIRHS 331
RFC+ +GRT Q K RHS
Sbjct: 62 RFCRGVGRTAQAKNRHS 78
>At5g38565.1 68418.m04663 F-box family protein contains F-box domain
Pfam:PF00646
Length = 415
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 279 IASAKEWEEQFREKYDIVGRLLKPGETPN 365
I S K FREK I+G+LLK ++PN
Sbjct: 216 ITSVKRLNHMFREKSKILGQLLK--DSPN 242
>At3g17340.1 68416.m02216 importin-related contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 822
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 234 DNEEYDPCNDLTPDEIASAKEWEEQFREKYDIVGRLLKPGETPNKYSDDENDD 392
++EE D ND E +E EE+F E+Y V L+ E + +D+E+DD
Sbjct: 718 ESEETDS-ND-EDSESDECEETEEEFLERYAKVAAELEDSEVIEE-ADEEDDD 767
>At5g65330.1 68418.m08218 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL78
Length = 341
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 252 DHTLRYQLQPLVQSLNHE*SPCQRKLRTVLRVRKTDVPL*HQ 127
DH QL L+QSL S Q +LR V + + L HQ
Sbjct: 104 DHYSPQQLSQLIQSLERTLSTLQERLRIVEAQKLQNTNLVHQ 145
>At1g78080.1 68414.m09099 AP2 domain-containing transcription factor
RAP2.4 identical to AP2 domain containing protein
GI:2281633 from [Arabidopsis thaliana]
Length = 334
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 316 SLNCSSHSFAEAISSGVKSLHGSYSSLSAAATCPVAKPRVESLPAKAAYXXXXX*NRRPF 137
S S +A+ +KS+ S SS SAA+ P SLP Y +PF
Sbjct: 13 SFQDSGGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFSLPPLPGYYPDSTFLTQPF 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,363
Number of Sequences: 28952
Number of extensions: 168699
Number of successful extensions: 545
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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