Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J17
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 30 0.11
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 29 0.34
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 27 1.0
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 26 1.8
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 26 1.8
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 3.1
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 25 4.1
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 5.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 5.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 9.6
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 24 9.6
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 24 9.6
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 24 9.6
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 9.6
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 30.3 bits (65), Expect = 0.11
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 265 GLHEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHSWL 158
G H+FR N+G +R FL IF D + + ++L
Sbjct: 69 GYHQFRKNVGKEAKLRAFLPQIFGGDSWKLAIPAFL 104
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 28.7 bits (61), Expect = 0.34
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 68 FDVVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDVV 247
F VIGKDS + K + +K + YV P+ +I + +L EN K S V
Sbjct: 60 FGFVIGKDSSQISQKVAKSVNDLKKVIYVENPSYEHNIPDQIAN-VLFENVKKNEISHVF 118
Query: 248 TKFMETFKMGMLPR 289
+ T G++PR
Sbjct: 119 SAH-STVGKGVMPR 131
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 27.1 bits (57), Expect = 1.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 83 GKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYS 232
G SL+ A C+ LL+Y P++ + A EY+LE + +S
Sbjct: 369 GDTSLLIAARNGAMDCVNSLLSYNANPSIPNRQRRTASEYLLEADKKPHS 418
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 161 PTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETF 268
PT+Y+D K V ++ +L D + V+ +M F
Sbjct: 379 PTIYDDYKFVTKKELLNLGLDHLVGTGVIRAYMHGF 414
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 259 HEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHS 164
H ++N R+ VFLQ F F D LVH+
Sbjct: 97 HRHKSNTFARLTAAVFLQKGFKTYFFDHLVHT 128
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 198 NICWRKTRTSTRNPMLLRNSWRPS 269
+IC KT T T+ M+ R W PS
Sbjct: 364 DICSDKTGTITQGKMITRRVWIPS 387
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2
Query: 351 RETFTGPVPFATAFV*TKTSPRGSMPILKVSMNFVTTSDFEYLSVFSSSIYSLATSLMSS 172
+E+FT F T V + +P G + I+ N V T + EY+++ +SL+S+
Sbjct: 505 KESFTPDGWFRTGDV-GELTPEGLLRIIDRKKNLVKTQNGEYIALEKLESRYRTSSLVSN 563
Query: 171 YTV 163
V
Sbjct: 564 ICV 566
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 373 SLAKVQYAGNFYRPCS 326
+LAK+ Y G F+ PC+
Sbjct: 316 NLAKILYNGQFFSPCT 331
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 234 FEYLSVFSSSIYSLATSLMSSYTV 163
FEY+S S IY L +L+ YT+
Sbjct: 555 FEYVSRLSQYIYLLRIALVRLYTI 578
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 365 ESTVCGKLLPALFHLQRHLCERRPHHAVAC 276
E+ CG+L L + H CE+ H C
Sbjct: 694 ENVRCGELCNKLLSCKTHFCEKLCHPDGEC 723
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 23.8 bits (49), Expect = 9.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 153 YCSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSS 302
Y S ++ RKS GN+ + + S + P++ ++ S + R RSS
Sbjct: 221 YQSSSLKQSKRKSEGNLLFPEKPHSAQLPLVSPSTSESSMFTNLRRTRSS 270
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 207 WRKTRTSTRNPMLLRNSW 260
+R +T NP+LL N W
Sbjct: 521 YRAVQTDNDNPLLLANKW 538
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 335 ALFHLQRHLCERRP-HHAVACP 273
AL H+Q +LC+ RP +VA P
Sbjct: 240 ALMHMQGYLCQGRPLRISVASP 261
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 342 FTGPVPFATAFV*TKTSPRGSMPILKVSMNFVTTS 238
F+ P P + KTS S+P+L+ NF ++S
Sbjct: 345 FSSPKPAHRFYELNKTSSNLSIPVLQKPSNFHSSS 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,532,532
Number of Sequences: 5004
Number of extensions: 31132
Number of successful extensions: 122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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