Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J17
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0057 - 31326067-31326097,31326453-31326517,31326960-313270... 31 0.42
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233... 30 0.56
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 29 1.7
12_02_0503 - 19756561-19757991,19758606-19759967 27 3.9
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 3.9
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 27 5.2
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 27 5.2
12_02_0771 - 23013984-23014358,23015168-23015980 27 6.9
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 27 6.9
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 6.9
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 6.9
04_03_0612 + 18023354-18023916,18024046-18024805 27 6.9
01_06_1450 + 37448664-37448936,37449643-37449885 27 6.9
12_01_0093 + 732276-732619,732722-732731 26 9.1
11_01_0093 + 692421-692767,692857-692866 26 9.1
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 26 9.1
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 26 9.1
>03_06_0057 -
31326067-31326097,31326453-31326517,31326960-31327032,
31327134-31327185,31327320-31327366,31327694-31327728
Length = 100
Score = 30.7 bits (66), Expect = 0.42
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 364 KVQYAGNFY--RPCSICNGICVNEDLTTR*HAHFEGLHEFRNNIGF 233
KV+ G +Y RPCS+C+ C L T E +++ N +GF
Sbjct: 34 KVEAHGLWYSARPCSVCDYCCFQSQLNTDKSFSSENVYQNTNIMGF 79
>01_06_0120 +
26622285-26622433,26623156-26623219,26623310-26623399,
26623588-26623644,26623832-26623880,26624320-26624396,
26624918-26624957,26625037-26625131,26625525-26625689,
26625777-26625887,26625971-26626058,26626715-26626781,
26626955-26627063,26627155-26627272,26628345-26628590,
26628956-26629095,26629262-26629444,26629560-26629679,
26629932-26629967
Length = 667
Score = 30.3 bits (65), Expect = 0.56
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -2
Query: 291 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQI 124
P GSM I+ N S EY++V + +IY L +++ S + G S F+SF++ +
Sbjct: 516 PDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGLVSAIDSIWVYGNS--FESFLVAV 570
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 146 NYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV-VTKFMETFKMGMLPRGEVFVH 307
N VL+P I+ +ARE+M++ K DV + KF + M L + +H
Sbjct: 939 NIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMNELAQQAADLH 993
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +1
Query: 226 VLEIR-CCYEIHGDLQNGHATAW*GL-RSHKC 315
VL+I CC E+HG+ Q+G + W + R H C
Sbjct: 894 VLDINGCCNELHGECQSG-GSEWSKICRIHSC 924
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 3.9
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 101 KADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETFKMGM 280
KA +K E + L N L P D+K+ +Y +E N + + + V + T M
Sbjct: 165 KAHIKKLESILRLLDNDELSPEQVNDVKDFLDDY-VERNQEDFDEFSDVEELYSTLPMEK 223
Query: 281 LPRGE--VFVHTNAVANGTGPVKVSRIL 358
+ E V + +++ G V + +L
Sbjct: 224 VEALEDMVSLAPSSLVKGVASVSTTAVL 251
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 176 DIKEVAREYMLEENTDKYSKSDVVT 250
DIK+V ++ ++E N D+Y DV T
Sbjct: 232 DIKKVLKDILIEVNKDRYMVLDVST 256
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 127 LHHETLELRTAANCVRGHQGSREGIYAGG 213
LHH+ L+ + AN +R H G E + G
Sbjct: 1001 LHHDQLQSQQLANALRQHAGREEERHLSG 1029
>12_02_0771 - 23013984-23014358,23015168-23015980
Length = 395
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 182 KEVAREYMLEENTDKYSKSDVVTKFME 262
+E EY L EN D YS S + K ME
Sbjct: 98 EERINEYELSENIDNYSFSSYLPKSME 124
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 182 KEVAREYMLEENTDKYSKSDVVTKFME 262
+E EY L EN D YS S + K ME
Sbjct: 939 EERINEYELSENIDNYSFSSYLPKSME 965
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 182 KEVAREYMLEENTDKYSKSDVVTKFME 262
+E EY L EN D YS S + K ME
Sbjct: 550 EERINEYELSENIDNYSFSSYLPKSME 576
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +2
Query: 89 DSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENT 220
+ L ++K+KE+C + L +++++++ E+ L EN+
Sbjct: 894 EDLQIMNLKLKEVCAKNEVEKALLSEKVQEVEKLSEEFSLMENS 937
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -2
Query: 273 ILKVSMNFVTTSDFEYLSVFSSSIYSLATSLMSSYTVGCST*FKSFM 133
I+++ TSD LS+ S +Y++ ++ +GC + F+
Sbjct: 9 IIEILKKITRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGLATEDFL 55
>01_06_1450 + 37448664-37448936,37449643-37449885
Length = 171
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 174 RTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMPLQM 326
R S++S IC ++T PM L S RPS A ++++ + +++
Sbjct: 90 RRSKQSAVLICSNPSQTLIHTPMPLPKSTRPSVTASPELIKAQTAEFAVEI 140
>12_01_0093 + 732276-732619,732722-732731
Length = 117
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 139 TLELRTAANCVRGHQGSREGIYAG 210
T + RTA NC++ GS G+ AG
Sbjct: 67 TADRRTACNCLKNVAGSISGLNAG 90
>11_01_0093 + 692421-692767,692857-692866
Length = 118
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 139 TLELRTAANCVRGHQGSREGIYAG 210
T + RTA NC++ GS G+ AG
Sbjct: 68 TADRRTACNCLKNVAGSISGLNAG 91
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 291 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQI 124
P GS+ I+ N S EY++V + ++Y + + S + G S F+SF++ +
Sbjct: 476 PNGSLKIIDRKKNIFKLSQGEYVAVENLENVYGVLQEIDSIWIYGNS--FESFLVAV 530
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 353 CGKLLPALFHLQRHLCERRPHHAVACPF 270
CGK + +L+RH C R CP+
Sbjct: 824 CGKRFSSHKYLKRHQCVHRDERPFKCPW 851
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,307,090
Number of Sequences: 37544
Number of extensions: 217416
Number of successful extensions: 638
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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