Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J17
(388 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_5613| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_6452| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_50409| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055) 27 7.1
SB_1479| Best HMM Match : OTU (HMM E-Value=0.34) 26 9.3
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 26 9.3
SB_5867| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 174 RTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKW 275
R + S I WR S+R+P L+R S S W
Sbjct: 205 RIIKNSNYEILWRALGLSSRSPTLMRGSLTVSVW 238
>SB_5613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +3
Query: 147 TTYCSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 263
TT+ +CT T ++ N+ W+ + TR+ +W+
Sbjct: 5 TTWRGNVCTHTRHGAKDNMAWKWMHSHTRHGAKDNMAWK 43
>SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 277 AHFEGLHEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHSW--LQYVVQEFH 134
A F GLH + + R FL+H F RD D L+H LQ QE H
Sbjct: 151 AGFAGLHGYTAELMLRTENMTFLEHHF-RDLRDGLLHIGFSLQGRTQEKH 199
>SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 191 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNAVANGTGPV 340
ARE+ ++N +++ K V+ F+ K + P G + T + + TG +
Sbjct: 259 AREFYRKDNLNEHLKLYEVSNFIPEVKASLSPTGVIQSLTGVIQSPTGVI 308
>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 2 VLILVAFLAAATASVVNDANYSF 70
VLIL+AF A A S+VN Y F
Sbjct: 503 VLILLAFYALALGSIVNPVIYCF 525
>SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +3
Query: 147 TTYCSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 263
TT+ +CT T ++ N+ W+ + TR+ +W+
Sbjct: 5 TTWRGNVCTHTRHGAKDNMTWKWMHSHTRHGAKDNMAWK 43
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 65 SFDVVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYM 205
S D V+GK + + ++KLL Y+L+ + ++ K+ AR+ M
Sbjct: 250 SLDKVVGKALSVLLVCYAAQNNLLKLLKYLLEVPLVQEEKDAARQQM 296
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +1
Query: 109 CENEGDLHHETLELRTAANCVRGHQGSREGIYAGGKHGQVLEIRCC 246
CE+ H EL T A +RE KHG L CC
Sbjct: 135 CEHMPTQPHTIKELATKAELEEELPAAREDFKTCAKHGLDLRFYCC 180
>SB_6452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 241 CCYEIHGDLQNGHATAW-*GLRSHKCRCKWNRAGKSFPHTVLSPRTMT 381
C E HGDL N + AW GLR R N +G +F + P T
Sbjct: 28 CACEFHGDLVNLESLAWQDGLRP---RYSVNSSGYTFAYNPCVPYKTT 72
>SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 26.6 bits (56), Expect = 7.1
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Frame = +2
Query: 20 FLAAATASVVNDANYS-FD-VVIGKDSLMKADVKMKEICIMK---LLNYVLQ-PTVYEDI 181
+ T + D YS D VV+G DSLM DV+ + + Y+ + P +Y+
Sbjct: 317 YFTVTTRNAQGDVYYSEIDHVVVGVDSLMWGDVEASVKSLHNGHYEVKYIARVPGIYKIQ 376
Query: 182 KEVAREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNAVANGT-GPVKVS 349
E+ +++ + + K V+T +++F + +G+ F+ + VA T G + VS
Sbjct: 377 VEIGGQHIKDSPFNVEVKQPVLTP-VKSFSSHGMTKGK-FLQPHGVAVSTIGQIVVS 431
>SB_50409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 386 EVVIVLGESTVCGKLLPALFHLQRHLCERRPHHAVA 279
++V+++G K + + H R LCE+RP+H+ A
Sbjct: 17 KIVLIVGVVFSMTKSVQQVIHDNR-LCEKRPNHSTA 51
>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
Length = 554
Score = 26.6 bits (56), Expect = 7.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 65 SFDVVIGKD-SLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDK-YSKS 238
+F +++GK SL K + + ++ VL +VY E M++EN D+ Y +
Sbjct: 25 AFSLLLGKMCSLYGVHAGFKTMAVAAVIG-VLASSVYHPTVSGDEEMMIDENVDRNYERI 83
Query: 239 DVVTKFMETFKMGMLPRGEVFV 304
+ K K G+ + + FV
Sbjct: 84 PLRRKCYYAVKPGLHWQNKAFV 105
>SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)
Length = 554
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 214 FLQHIFPRDFLDVLVHSWLQYV----VQEFHDADLLHFHICLHETVFSD 80
F +I P +++D + +YV +Q F ADLLHF I + TV D
Sbjct: 86 FEDNILPSNWIDAVQKLRGEYVTDMIIQSF--ADLLHFKIIIIVTVHGD 132
>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 1258
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 221 DKYSKSDVVTKFMETFKMGMLP 286
D Y K D VTK ++T ++ +LP
Sbjct: 713 DNYKKDDEVTKALDTTRVHLLP 734
>SB_5867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 26.2 bits (55), Expect = 9.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +1
Query: 175 GHQ---GSREGI--YAGGKHGQVLEIRCCYEIHGDLQNGHATAW*GLRSHK 312
GH+ + EG+ Y G K G+VL RC Y+ L+ A + G+R+++
Sbjct: 252 GHETRNAAMEGVRPYEGEKTGKVLTFRCEYQTLRKLEKSKAIIF-GIRTYQ 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,685,183
Number of Sequences: 59808
Number of extensions: 253203
Number of successful extensions: 828
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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