Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J17
         (388 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058761-1|BAB47487.2| 2469|Homo sapiens KIAA1858 protein protein.     33   0.42 
X58899-1|CAA41703.1|  368|Homo sapiens steroid 21-monooxygenase ...    29   6.9  
Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription facto...    28   9.1  
BC065250-1|AAH65250.1|  308|Homo sapiens general transcription f...    28   9.1  
BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.       28   9.1  
BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.       28   9.1  
BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for IM...    28   9.1  
AL137601-1|CAB70836.1|  123|Homo sapiens hypothetical protein pr...    28   9.1  
AF548661-1|AAN40702.1|  308|Homo sapiens general transcription f...    28   9.1  

>AB058761-1|BAB47487.2| 2469|Homo sapiens KIAA1858 protein protein.
          Length = 2469

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 353  CGKLLPALFHLQRHLCERRPHHAVACPF*RSP*IS*QH 240
            CGK  P  F LQRHL    P     CP  R P +  +H
Sbjct: 1858 CGKRFPKPFKLQRHLAVHSPQRVYLCP--RCPRVYPEH 1893


>X58899-1|CAA41703.1|  368|Homo sapiens steroid 21-monooxygenase
           protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 159 SQLCTRTSRKSRGNICWRKTRTSTRNPMLL--RNSWRP 266
           S  C RT+R  R ++ W+  +  TR+ +LL  R+S  P
Sbjct: 97  SSWCLRTTRTCRWSLLWKAHKKLTRSALLLGIRDSMEP 134


>Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription factor
           2, 35 kD subunit protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVH 307
           A E ++EE  D  +KSD+  +  ET   G L +   ++H
Sbjct: 107 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIH 145


>BC065250-1|AAH65250.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVH 307
           A E ++EE  D  +KSD+  +  ET   G L +   ++H
Sbjct: 107 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIH 145


>BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVH 307
           A E ++EE  D  +KSD+  +  ET   G L +   ++H
Sbjct: 102 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIH 140


>BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVH 307
           A E ++EE  D  +KSD+  +  ET   G L +   ++H
Sbjct: 102 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIH 140


>BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for
           IMAGE:4724313) protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVH 307
           A E ++EE  D  +KSD+  +  ET   G L +   ++H
Sbjct: 34  ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIH 72


>AL137601-1|CAB70836.1|  123|Homo sapiens hypothetical protein
           protein.
          Length = 123

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 356 VCGKLLPALFHLQRHLCERRPHHAVACPF*RSP*IS*QHRISSTCPCFPPAYI 198
           +C  +L  LFH    L   +  H    PF +SP I  Q   +S  PC PP  I
Sbjct: 6   MCFVVLDKLFH---PLFPPQNTHTEQTPFHKSPHIHWQSPFASWSPCVPPKSI 55


>AF548661-1|AAN40702.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVH 307
           A E ++EE  D  +KSD+  +  ET   G L +   ++H
Sbjct: 107 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIH 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,260,428
Number of Sequences: 237096
Number of extensions: 1107943
Number of successful extensions: 6592
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6592
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)