Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J17
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    28   2.6  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       28   2.6  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       28   2.6  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AC024791-34|AAF60670.2|  440|Caenorhabditis elegans Hypothetical...    27   6.1  
Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U43283-4|AAU05548.1|  311|Caenorhabditis elegans Dehydrogenases,...    26   8.1  
AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical ...    26   8.1  
AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine re...    26   8.1  

>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 288 RGSMPILKVSMNFVTTSDFEYLSVFSSSIYSLATSLMSSYTVGCST*FKSFMMQISFIFT 109
           RGS      S +F ++S     S FSSS  S  TS  SSY  G +T + S   Q  F  T
Sbjct: 29  RGSSGARSSSSSFSSSSSRSSGSSFSSSSSSRPTSGTSSYRSG-NTQYSSNFRQNVFHTT 87

Query: 108 SAFMRLSF-PIT 76
           S     S+ P+T
Sbjct: 88  STTTMFSYSPLT 99


>Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical
           protein F52H3.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 236 ISSTCPCFPPAYIPSRLP*CPRTQLA 159
           +S +CPC  P+ IP+RL   P TQ A
Sbjct: 26  LSISCPCDNPSNIPNRLFASPPTQSA 51


>Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical
           protein K03B8.2 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 5   LILVAFLAAATASVVNDANYSFDVVIGKDSLMKADVKMKEICIMKLLN 148
           L+L  FLA    S +      FD   GKD ++  D+ + E   +++LN
Sbjct: 27  LLLTLFLALVAGSAIRKDVDEFDSNKGKDGIVDGDIMLTE-AQLRILN 73


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 156 CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 263
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 156 CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 263
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 156 CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 263
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 107  DVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV 244
            DV +       L+ +V   + Y  +K VA    +  N+D Y  SD+
Sbjct: 925  DVSISNCIDQALIEFVNYSSEYSKLKFVANRIKIANNSDNYIVSDI 970


>AC024791-34|AAF60670.2|  440|Caenorhabditis elegans Hypothetical
           protein Y47G6A.25 protein.
          Length = 440

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 143 LNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKF-METFKMGMLPRGEVFVHTNAV 319
           L ++L P    D+KE+ RE ++ E   K S+ +++ +F  + FK+ +  + ++  H   +
Sbjct: 187 LRFLLCPA---DLKELNRE-IIAEKRQKMSEKEIICRFGSDKFKIKLFKKQKIGSHVTLI 242


>Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical
           protein T11F9.3 protein.
          Length = 379

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 207 WRKTRTSTRNPMLLR---NSWRPSKWACYRVVRSSFTQMP 317
           W KTR+ST NP ++    N+  P     YR +  + T  P
Sbjct: 336 WNKTRSSTNNPFIIAKYGNNRTPHFEFEYRYIPGNATAAP 375


>U43283-4|AAU05548.1|  311|Caenorhabditis elegans Dehydrogenases,
           short chain protein30 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 74  VVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTK 253
           ++ G  +L K DVK K + I    + + +   +E  K  A+  +L  +T+K    ++  +
Sbjct: 33  IIPGAHNLPKLDVKNKVVVITGASSGLGKSLAFELYKRGAQVILLARSTEKL--KEICEE 90

Query: 254 FMETFKM 274
             ETF +
Sbjct: 91  LKETFPL 97


>AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical
           protein Y5F2A.4 protein.
          Length = 454

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 359 TVCGKLLPALFHLQRHLCERRPHHAVACPF 270
           ++C K+ P L HLQRH          +C F
Sbjct: 46  SMCDKVFPRLSHLQRHQMTHLNVRNYSCTF 75


>AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein241 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   VLILVAFLAAATASVVNDANYSFDVVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYE-D 178
           V ++V F+AA TASV+      F  +  ++S  K   K     I  L+  +  P  ++  
Sbjct: 101 VYLMVTFIAALTASVLAIYENRFYTLFAQNSWWKKVRKPFLFSIYTLVPLIFLPPYFDLP 160

Query: 179 IKEVAREYMLEE 214
            +E AR+ +L +
Sbjct: 161 EQESARQLVLSK 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,571,826
Number of Sequences: 27780
Number of extensions: 181110
Number of successful extensions: 598
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)