Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_J16
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 27 2.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 3.5
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 3.5
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 4.7
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 26 4.7
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.2
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 25 6.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 6.2
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 25 8.1
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 25 8.1
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 149 KEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSI 259
++Y+ +W R+P + ++ VQ CI+ EL T S+
Sbjct: 43 RKYNTIVWQSRHPILCEYIEEVVQSCIE--ELQTGSV 77
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -2
Query: 578 SQLNEHRCMTSEIDAHRTNLSHIQI*MFSSLYLCYISARVTPAESILIRYLDLEYIAHAG 399
S+ NE C+T ++ L H+ I +L + Y + E I + L E IA G
Sbjct: 1158 SEKNESSCLTKPMNKEWPTLGHVSI---KNLTVSYSIGQAAVLEDINLEILPKEKIAIVG 1214
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 246 LQTAYHTTWRSNTAKHLDKNWTYLEQTCQIIHQFSSTFTARTGKIIARISRTGMR 410
L+ + H + S ++ L+ + T I+ SST T TGKI+ + M+
Sbjct: 736 LEKSVHKNYESLRSQLLEYKAANEKHTEAILSVVSSTLTENTGKILESVVEKSMQ 790
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 98 QNTVEMSSLIMEIKDLEKEYSPTMWSERYPTPEDVLKSHVQFC-IKESELATNSIPHNLE 274
++ +E+S L +E E +PT E+Y TP S V C + + SI H LE
Sbjct: 41 EHMLEVSKLQLESDIYELVRTPTKIKEKYSTPR---LSPVHRCALPTPRMRLTSIQHQLE 97
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 344 ILVYIYRAYWQDYRENIAHRHAL 412
+L YR Y D+RE++ + HAL
Sbjct: 174 VLENTYRIYGSDWRESLFYTHAL 196
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 271 GDRIRRNTWTKIGHTWNRLAR-SFTNSRLHLPRVLA 375
GD++R N +K GH+ +R S NS HLP +A
Sbjct: 73 GDKVRGNRRSKSGHSSYAGSRISGGNSNSHLPSGVA 108
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 116 SSLIMEIKDLEKEYSPTMWSERYPTPEDVL 205
S+LI ++ DL++E + E PTPE ++
Sbjct: 283 SALIEKLADLDEEIADIYVMEEDPTPEQLM 312
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 555 HDQRNRRPSNQFVPYSN 505
HD+R +RP+ + +P SN
Sbjct: 344 HDRRQKRPTRRHIPCSN 360
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 242 LATNSIPHNLEIEYGETPGQKLDILGTDLPDHSPILVYIYRAYWQDYREN 391
+A+N+ P N+ T QKL +LG S +++ + + DYRE+
Sbjct: 1 MASNTAPKNVV-----TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRES 45
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 267 TWRSNTAKHLDKNWTYLEQTCQII 338
TW+S T KNW Y + Q+I
Sbjct: 26 TWQSPTDPKNPKNWIYARKWTQLI 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,941
Number of Sequences: 5004
Number of extensions: 51142
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -