Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J16
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093           31   0.89 
02_02_0104 - 6802017-6802352,6802756-6803650,6803839-6803988,680...    30   1.2  
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     29   2.1  
11_06_0286 + 21945699-21946213,21946255-21947542                       29   2.7  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    27   8.3  

>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
          Length = 1040

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +2

Query: 149 KEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSIPHNLEIEYGETPGQKLDI 313
           +E+S    SE+YP   ++ K  +  C +  +L  + +P   E++   T  +KLD+
Sbjct: 545 EEFSLVAASEQYPKAANITKISLSGCCRLKKLILSGLPKLEELDLSGTILEKLDL 599


>02_02_0104 -
           6802017-6802352,6802756-6803650,6803839-6803988,
           6804099-6804349
          Length = 543

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 269 LEIEYGETPGQKLDILGTDLPDHSPILVYIYRAYW 373
           LEI +  TPG  + +LG+ L   +  LVY Y  +W
Sbjct: 10  LEISHVATPGLPVLLLGSSLALLAVFLVYFYAPFW 44


>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +2

Query: 149 KEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSIPHNLEIEYGETPGQKLDI 313
           +E+S    SE+YP   ++ K  +  C +  +L  + +P   E++   T  +KLD+
Sbjct: 545 EEFSLVAASEQYPKAANITKISLFGCCRLKKLILSGLPKLEELDLSGTILEKLDL 599


>11_06_0286 + 21945699-21946213,21946255-21947542
          Length = 600

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 401 GARYSRDNLASTRGKCRRELVNDLASLFQVCPIFVQVFRRIRSPGCVV 258
           G+R+   NL  T G CRR+  + L   + VCP+ +    +++S  CVV
Sbjct: 156 GSRWEEFNLDWTMG-CRRQRFDALIHRYLVCPVDIGGTGKVKS--CVV 200


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 31   FKKDLINLNNQVSLKTLSVFKGSKYSRNVITYNG 132
            F   ++N N +    T SV +GS Y+R VITY G
Sbjct: 1102 FYFSIVN-NEEKRYITFSVSEGSPYTRYVITYAG 1134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,966
Number of Sequences: 37544
Number of extensions: 291457
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)