Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J16
         (585 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC142973-1|AAI42974.1|  103|Homo sapiens Unknown (protein for MG...    47   6e-05
BC132824-1|AAI32825.1|  303|Homo sapiens AFMID protein protein.        46   1e-04
AY052833-1|AAL11018.1|  556|Homo sapiens glypican-4 protein.           29   9.1  
AF064826-1|AAC31899.1|  556|Homo sapiens glypican 4 protein.           29   9.1  
AF030186-1|AAC69991.1|  556|Homo sapiens glypican-4 protein.           29   9.1  

>BC142973-1|AAI42974.1|  103|Homo sapiens Unknown (protein for
           MGC:167063) protein.
          Length = 103

 Score = 46.8 bits (106), Expect = 6e-05
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +2

Query: 128 MEIKDLEKEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSIPHNLEIEYGETPGQKL 307
           M  ++LE +Y P+ W  R    E+ L+++ Q  I+ +  A  +    L + YG+  G+K+
Sbjct: 18  MSAEELENQYCPSRWVVRLGA-EEALRTYSQIGIEATTRARATRKSLLHVPYGDGEGEKV 76

Query: 308 DILGTDLPDHS-PILVYIYRAYWQDYR 385
           DI   D    + P  ++ +  YWQ  R
Sbjct: 77  DIYFPDESSEALPFFLFFHGGYWQSGR 103


>BC132824-1|AAI32825.1|  303|Homo sapiens AFMID protein protein.
          Length = 303

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +2

Query: 128 MEIKDLEKEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSIPHNLEIEYGETPGQKL 307
           M  ++LE +Y P+ W  R    E+ L+++ Q  I+ +  A  +    L + YG+  G+K+
Sbjct: 18  MSAEELENQYCPSRWVVRLGA-EEALRTYSQIGIEATTRARATRKSLLHVPYGDGEGEKV 76

Query: 308 DILGTDLPDHS-PILVYIYRAYWQ 376
           DI   D    + P  ++ +  YWQ
Sbjct: 77  DIYFPDESSEALPFFLFFHGGYWQ 100


>AY052833-1|AAL11018.1|  556|Homo sapiens glypican-4 protein.
          Length = 556

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 107 VEMSSLIMEIKDLEKEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSIPHNLEIEYG 286
           V++S  IM ++D   + S  ++    P P+ +    +   I ES  +    PH+ E    
Sbjct: 317 VKISDAIMNMQDNSVQVSQKVFQGCGP-PKPLPAGRISRSISESAFSARFRPHHPEERPT 375

Query: 287 ETPGQKLDILGTDLPD 334
              G  LD L TD+ D
Sbjct: 376 TAAGTSLDRLVTDVKD 391


>AF064826-1|AAC31899.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 107 VEMSSLIMEIKDLEKEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSIPHNLEIEYG 286
           V++S  IM ++D   + S  ++    P P+ +    +   I ES  +    PH+ E    
Sbjct: 317 VKISDAIMNMQDNSVQVSQKVFQGCGP-PKPLPAGRISRSISESAFSARFRPHHPEERPT 375

Query: 287 ETPGQKLDILGTDLPD 334
              G  LD L TD+ D
Sbjct: 376 TAAGTSLDRLVTDVKD 391


>AF030186-1|AAC69991.1|  556|Homo sapiens glypican-4 protein.
          Length = 556

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 107 VEMSSLIMEIKDLEKEYSPTMWSERYPTPEDVLKSHVQFCIKESELATNSIPHNLEIEYG 286
           V++S  IM ++D   + S  ++    P P+ +    +   I ES  +    PH+ E    
Sbjct: 317 VKISDAIMNMQDNSVQVSQKVFQGCGP-PKPLPAGRISRSISESAFSARFRPHHPEERPT 375

Query: 287 ETPGQKLDILGTDLPD 334
              G  LD L TD+ D
Sbjct: 376 TAAGTSLDRLVTDVKD 391


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,757,293
Number of Sequences: 237096
Number of extensions: 1560069
Number of successful extensions: 3606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3606
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)