Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_J15
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    29   0.28 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   3.4  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   4.5  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   5.9  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   5.9  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   7.9  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 239 EEFEEERADGVKVKSVCTFEGNILKQIQKAADGLEVTYIREFGPEELKAVMTAKDV 406
           EE  E+   G +  + CT + NI   I + +D +E   I   GP E++  M+  DV
Sbjct: 220 EETNEDDLLG-QSPTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 409  SHVLGCHYSFQLFRSELPDVSDLQTVGSLLYLLQDVAFKSAY 284
            S  L C+ SFQLFRS LPD      +  +  L+  ++ +++Y
Sbjct: 1585 SRRLACN-SFQLFRSLLPDFDARMLLEIISRLVGTISDETSY 1625


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 204 VEEVTKLYSSPSLRSSTVGVTALAALRVISPTPSAF--MKSSKFSDVV 67
           V   T   SSPS  SST  + ++++    S + S+F  + SS FS V+
Sbjct: 131 VSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSSGFSTVL 178


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 266 GVKVK-SVCTFEGNILKQIQKAAD 334
           G K K S C F  +IL+QIQK+ +
Sbjct: 86  GTKGKGSTCAFTSSILQQIQKSGE 109


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 263 DGVKVKSVCTFEGNILKQIQKAADGLEVT---YIREFGPEELKAV 388
           D +  K + +F+G   KQI     G +     YI E+GPE LK +
Sbjct: 55  DHILQKFIESFDGK--KQIISLGAGTDTRVFRYISEYGPENLKFI 97


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 59  YKMTTSENFDDFMKALGVGLITR 127
           +K+++++  D+F++A   G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,573
Number of Sequences: 5004
Number of extensions: 37265
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)